View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14941_low_9 (Length: 355)
Name: NF14941_low_9
Description: NF14941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14941_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 5 - 354
Target Start/End: Original strand, 40722934 - 40723292
Alignment:
| Q |
5 |
ttatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatgg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40722934 |
ttatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatgg |
40723033 |
T |
|
| Q |
105 |
tgacatcccaaa---------cttttccgggtgctcaactggatattgaacagtctgcgtacacattaaccaaaatcagaaatagataatattggtaagg |
195 |
Q |
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| T |
40723034 |
tgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgcgtacacattaaccaaaatcagaaatagataatattggtaagg |
40723133 |
T |
|
| Q |
196 |
aaataagttgtaattaagtactaggaaagatttctgacctcttgcagttcatgcttgacattctcaaggcctccgatgtcctcccagctgacattaggca |
295 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723134 |
aaataaggtgtaattaagtactaagaaagatttctgacctcttgcagttcacgcttgacattctcaaggcctccgatgtcctcccagctgacattaggca |
40723233 |
T |
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| Q |
296 |
cctcaacaacctgttaatacagacattcgtaagaaaacagacagcaaaaaaggaatgac |
354 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40723234 |
cctcaacaacatgttaatacagacattcgtaagaaaacagacaacaaaaaaggaatgac |
40723292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 5 - 355
Target Start/End: Complemental strand, 40667071 - 40666712
Alignment:
| Q |
5 |
ttatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatgg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40667071 |
ttatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactcctttggatgg |
40666972 |
T |
|
| Q |
105 |
tgacatcccaaactt---------ttccgggtgctcaactggatattgaacagtctgcgtacacattaaccaaaatcagaaatagataatattggtaagg |
195 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| || ||| | | |||||| |
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| T |
40666971 |
tgacatcccaaacttctcaaacttttccgggtgctcaaccggatattgaacagtctacgtacacacaaaccaaaatcagaaacaggtaaaactagtaagg |
40666872 |
T |
|
| Q |
196 |
aaataagttgtaattaagtactaggaaagatttctgacctcttgcagttcatgcttgacattctcaaggcctccgatgtcctcccagctgacattaggca |
295 |
Q |
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|||| || |||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666871 |
aaatcaggtgtaattaagtagtaggaaagatttatgacctcttgcagttcacgcttgacattctcaaggcctccgatgtcctcccagctgacattaggca |
40666772 |
T |
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| Q |
296 |
cctcaacaacctgttaatacagacattcgtaagaaaacagacagcaaaaaaggaatgacc |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666771 |
cctcaacaacctgttaatacagacattcgtaagaaaacagacagcaaaaaaggaatgacc |
40666712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 27978392 - 27978280
Alignment:
| Q |
7 |
atactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatggtg |
106 |
Q |
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||||| |||||||| |||||||||||||| ||||| |||||||| || | ||||| ||||| || |||||||||||||| |||||||| ||||| |||| |
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| T |
27978392 |
atactaatgaagtttgcttgacattcattggcaatagctttggccaaaagggttttaccacaaccaggaggaccatagaacagaactccctttgaaggtg |
27978293 |
T |
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| Q |
107 |
acatcccaaactt |
119 |
Q |
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||||||||||||| |
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| T |
27978292 |
acatcccaaactt |
27978280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 41091942 - 41092054
Alignment:
| Q |
7 |
atactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatggtg |
106 |
Q |
| |
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|||||||| ||||| || || |||||||| ||||| ||||| || || | ||||| |||||||| |||||||||||||| |||||||| || || || | |
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| T |
41091942 |
atactgataaagtttgcctggcattcattggcaatagcttttgccaatagtgttttaccacatccaggaggaccatagaaaagaactcccttcgaaggcg |
41092041 |
T |
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| Q |
107 |
acatcccaaactt |
119 |
Q |
| |
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|||| |||||||| |
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| T |
41092042 |
acattccaaactt |
41092054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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