View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14942_high_14 (Length: 244)
Name: NF14942_high_14
Description: NF14942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14942_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 99 - 234
Target Start/End: Complemental strand, 48570436 - 48570301
Alignment:
| Q |
99 |
gctactttgttggaataaatcgatatcattaagttagattcttcgactcatatggaagcacttaaatcgatatcatgtgatattcacagcctatcaccac |
198 |
Q |
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| T |
48570436 |
gctactttgttggaataaatcgatatcattaagttagattcttcgactcatatggaagcacttaaatcgatatcatgtgatattcacagcctctcaccac |
48570337 |
T |
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| Q |
199 |
aagtgataatgtttgctattaattttgtttttatat |
234 |
Q |
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| T |
48570336 |
aagtgataatgtttgctattaattttgtttttatat |
48570301 |
T |
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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 48570528 - 48570471
Alignment:
| Q |
7 |
cttatcattccgttatggattatggccatttctaccatttccttccgagtacttcacc |
64 |
Q |
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| T |
48570528 |
cttatcattccgttatggattatggccatttctaccatttccttccgagtacttcacc |
48570471 |
T |
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