View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14942_high_4 (Length: 488)
Name: NF14942_high_4
Description: NF14942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14942_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Original strand, 37117183 - 37117640
Alignment:
| Q |
13 |
tacattattctctgattcaaaattttctaaatcatcagtttttattacagcttcgttatcagcagactttcttgatctgtcggccacagaggtttcaggc |
112 |
Q |
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| T |
37117183 |
tacattcttctctgattcaaaattttctaaatcatcagtttttattacagcttcgttatcagcagactttcttgatctgtcggccacagaggtttcaggc |
37117282 |
T |
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| Q |
113 |
tcagctatcacagaacatgaattatcattgcttgaggtagtggcacctagtttatctatatcttccacttcttttttatcagcaggtaatccacccgaat |
212 |
Q |
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| T |
37117283 |
tcagctatcacagaacatgaattatcattgcttgaggtagtggcacctagtttatctatatcttccacttcttttttatcagcaggtaatccacccgaat |
37117382 |
T |
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| Q |
213 |
gcagacactctaacacacaacgcagactatatgcatgatttgcaaattcttgtagctctccctcaaatgttgcaccctccagggtgctaagatccttgca |
312 |
Q |
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| T |
37117383 |
gcagacactctaacacacaacgcagactatatgcatgatttgcaaattcttgtagctctccctcaaatgttgcaccctccagggtgctaagatccttgca |
37117482 |
T |
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| Q |
313 |
aagatcagcaatgctggcatgacccaatttccccgcttcgtagagtgtaacggcatgagttttcaggcctgacaaagttcaacaagtaggttgatcttga |
412 |
Q |
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| T |
37117483 |
aagatcagcaatgctggcatgacccaatttccccgcttcgtagagtgtaacggcatgagttttcaggcctgacaaagttcaacaagtaggttgatcttga |
37117582 |
T |
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| Q |
413 |
taaaacatacaaaccaatctcaaccaaaggacaatattgaaccctgattgttccaagt |
470 |
Q |
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| T |
37117583 |
taaaacatacaaaccaatctcaaccaaaggacaatattgaaccctgattgttccaagt |
37117640 |
T |
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Back To:
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Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 215 - 393
Target Start/End: Complemental strand, 36249512 - 36249334
Alignment:
| Q |
215 |
agacactctaacacacaacgcagactatatgcatgatttgcaaattcttgtagctctccctcaaatgttgcaccctccagggtgctaagatccttgcaaa |
314 |
Q |
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||||| ||||| ||||||||||| ||| |||||||||| |||||||| || || |||||||||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
36249512 |
agacattctaatacacaacgcaggctaaatgcatgattggcaaattcctgcagttctccctcaaattttgcaccttccagagtgctaagatccttgcaaa |
36249413 |
T |
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| Q |
315 |
gatcagcaatgctggcatgacccaatttccccgcttcgtagagtgtaacggcatgagttttcaggcctgacaaagttca |
393 |
Q |
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| T |
36249412 |
gatcagaaatgctggcataacccaatttacccgcttcatagagtgtaacagcatgagatttcaaacctgacaaagttca |
36249334 |
T |
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