View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14942_high_9 (Length: 298)
Name: NF14942_high_9
Description: NF14942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14942_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 14229976 - 14230252
Alignment:
| Q |
17 |
caatcctccgacgacatcctaaagacattcctcgcgccaagctctgaaacaaacaccctgctgcctcttcaattctccacttcagctctttgccaagtta |
116 |
Q |
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| T |
14229976 |
caatcctccgacgacatcctaaagacattcctcacgccaagctctgaaacaaaaaccctgctgcctcttcaattctccacttcagctctttgccaagtta |
14230075 |
T |
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| Q |
117 |
atttgattacatatcaggtgcccatgtaccatttgctgacatgagttcctttcctttgatnnnnnnnnnttactgatcgacattactcgaatactccctg |
216 |
Q |
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| T |
14230076 |
atttgattacatatcaggtgaccatgtaacatttgctgacatgagttcctttcctttgataaaaaaaaattactgatccacattactcgaatactccctg |
14230175 |
T |
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| Q |
217 |
tctagacttaccgatgctccatgtccccaataaacaccttgcatcagcaaaccatcagaactgctgcctttgcttct |
293 |
Q |
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| T |
14230176 |
tctagactgactgatgctccatatccccaataaacaccttgcatcagcaaaccatcagaactgctgcctttccttct |
14230252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 14220006 - 14220070
Alignment:
| Q |
112 |
agttaatttgattacatatcaggtgcccatgtaccatttgctgacatgagttcctttcctttgat |
176 |
Q |
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| T |
14220006 |
agttaatttgattacatatcagatgactatgtaccatttgcttacttgagttcctttcctttgat |
14220070 |
T |
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