View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14942_low_12 (Length: 297)

Name: NF14942_low_12
Description: NF14942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14942_low_12
NF14942_low_12
[»] chr6 (3 HSPs)
chr6 (1-275)||(8323526-8323797)
chr6 (72-117)||(15613296-15613341)
chr6 (70-119)||(26214532-26214581)
[»] chr1 (3 HSPs)
chr1 (70-150)||(34104232-34104312)
chr1 (72-119)||(27910246-27910293)
chr1 (72-116)||(26580984-26581028)
[»] chr4 (4 HSPs)
chr4 (72-117)||(8139840-8139885)
chr4 (72-117)||(9264029-9264074)
chr4 (72-116)||(19547743-19547787)
chr4 (72-120)||(20316849-20316897)
[»] chr2 (7 HSPs)
chr2 (72-150)||(34368686-34368765)
chr2 (72-121)||(25937957-25938006)
chr2 (72-119)||(12556819-12556866)
chr2 (72-118)||(4450998-4451044)
chr2 (72-117)||(26292105-26292150)
chr2 (72-117)||(26652351-26652396)
chr2 (72-120)||(30682885-30682933)
[»] chr7 (5 HSPs)
chr7 (72-118)||(1732025-1732071)
chr7 (70-119)||(9891196-9891245)
chr7 (72-117)||(21884287-21884332)
chr7 (72-117)||(23007980-23008025)
chr7 (72-120)||(10991633-10991681)
[»] scaffold0086 (1 HSPs)
scaffold0086 (72-117)||(8768-8813)
[»] chr5 (4 HSPs)
chr5 (72-120)||(23013741-23013789)
chr5 (78-150)||(18751346-18751420)
chr5 (72-117)||(13692972-13693017)
chr5 (70-119)||(23032067-23032116)
[»] scaffold0340 (1 HSPs)
scaffold0340 (72-119)||(16327-16374)
[»] chr3 (3 HSPs)
chr3 (72-119)||(51119169-51119216)
chr3 (72-117)||(20886193-20886238)
chr3 (72-116)||(23055270-23055314)
[»] chr8 (2 HSPs)
chr8 (79-117)||(24114920-24114958)
chr8 (78-118)||(28318325-28318365)
[»] scaffold0085 (1 HSPs)
scaffold0085 (72-116)||(23388-23432)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 8323526 - 8323797
Alignment:
Q  1 agaggaaggcaattgttagaagtatgaagggaagagtctctcctcgaccttcttcttcactttgaagtttattttgtttcttttgtaatttgtctttaat 100  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||   |||| ||||||||||| ||||||||||||||||| ||||||    
T  8323526 agaggaaggcaatcgttagaagcatgaagggaagagtctctcctcgaccttcttct---cttttaagtttattttatttcttttgtaatttgtttttaat 8323622  T
Q  101 tatcatgagttactaaacctaattggctaaaattctaagataaatctctaattgnnnnnnnnnnnnnnnnnattcaagtcttttgttgagttgtcttaat 200  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||                 |||||||||||||| ||||||||||||||    
T  8323623 tatcatgagttactaaacctaattgggtaaaattttaagataaatctctaattgattttttgattttttttattcaagtcttttgctgagttgtcttaat 8323722  T
Q  201 acttctcacttcaatacaattctaccatgaaatcaaagtctatcaaaacagttccacgaagtttatgttcatctt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8323723 acttctcacttcaatacaattctaccatgaaatcaaagtctatcaaaacagttccacgaagtttatgttcatctt 8323797  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 15613296 - 15613341
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 117  Q
    |||| ||||||| |||||||||||||| ||||||||||||||||||    
T  15613296 ttttatttctttcgtaatttgtctttagttatcatgagttactaaa 15613341  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 26214532 - 26214581
Alignment:
Q  70 tattttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 119  Q
    |||||| |||||||||||||||||||||  ||| ||||||| ||||||||    
T  26214532 tattttatttcttttgtaatttgtcttttgttaccatgagtaactaaacc 26214581  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 34104312 - 34104232
Alignment:
Q  70 tattttgtttcttttgtaatttgtctttaattatcatgagttactaaacctaattggctaaaattctaagataaatctcta 150  Q
    |||||| |||||||||||||||||||||| ||| ||||| | ||||||||  ||||| || |||||||||||||| |||||    
T  34104312 tattttatttcttttgtaatttgtctttagttaccatgaataactaaaccctattgggtagaattctaagataaacctcta 34104232  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 27910293 - 27910246
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 119  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||    
T  27910293 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaacc 27910246  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 26581028 - 26580984
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaa 116  Q
    |||||||| |||||| ||||||||||| ||||||||||| |||||    
T  26581028 ttttgtttgttttgttatttgtctttagttatcatgagtaactaa 26580984  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 8139885 - 8139840
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 117  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||    
T  8139885 ttttatttcttttgtaatttgtctttaattatcatgagtaactaaa 8139840  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 9264029 - 9264074
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 117  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||    
T  9264029 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 9264074  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 19547743 - 19547787
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaa 116  Q
    |||| |||||||||||||||||||||| ||| ||||||| |||||    
T  19547743 ttttatttcttttgtaatttgtctttagttaccatgagtaactaa 19547787  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 20316849 - 20316897
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacct 120  Q
    |||| ||||||||||||||| |||||| ||| ||||||| |||||||||    
T  20316849 ttttatttcttttgtaatttttctttagttaccatgagtaactaaacct 20316897  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 34368765 - 34368686
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacctaatt-ggctaaaattctaagataaatctcta 150  Q
    |||| ||||||||||||||||| |||| ||| ||||||| |||||||||  || ||||| |||||||||||||| |||||    
T  34368765 ttttatttcttttgtaatttgtttttagttaccatgagtaactaaacctttttaggctagaattctaagataaacctcta 34368686  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 25938006 - 25937957
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaaccta 121  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||||    
T  25938006 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaaccta 25937957  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 12556819 - 12556866
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 119  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||    
T  12556819 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaacc 12556866  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 4451044 - 4450998
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaac 118  Q
    |||| |||||||| |||||||| |||||||||||||||| |||||||    
T  4451044 ttttatttcttttataatttgtttttaattatcatgagtaactaaac 4450998  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 26292150 - 26292105
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 117  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||    
T  26292150 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 26292105  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 26652351 - 26652396
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 117  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||    
T  26652351 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 26652396  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 30682885 - 30682933
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacct 120  Q
    |||| ||||| |||||||||||||||| ||| ||||||| |||||||||    
T  30682885 ttttatttctattgtaatttgtctttagttaccatgagtaactaaacct 30682933  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 1732071 - 1732025
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaac 118  Q
    |||| |||||||||||||||||||||| ||||||||||| |||||||    
T  1732071 ttttatttcttttgtaatttgtctttagttatcatgagtaactaaac 1732025  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 9891245 - 9891196
Alignment:
Q  70 tattttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 119  Q
    |||||| |||||||||||||||||||||| ||| ||||||| ||||||||    
T  9891245 tattttatttcttttgtaatttgtctttagttaccatgagtaactaaacc 9891196  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 21884287 - 21884332
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 117  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||||    
T  21884287 ttttgtttcttttgtaatttgtctttagttaccatgagtaactaaa 21884332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 23008025 - 23007980
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 117  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||    
T  23008025 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 23007980  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 10991633 - 10991681
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacct 120  Q
    |||| ||||||||||||||||||||||  || ||||||| |||||||||    
T  10991633 ttttatttcttttgtaatttgtctttaggtaccatgagtaactaaacct 10991681  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 8813 - 8768
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 117  Q
    |||| |||||||||||||||||||||| ||||||||||| ||||||    
T  8813 ttttatttcttttgtaatttgtctttagttatcatgagtaactaaa 8768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 23013741 - 23013789
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacct 120  Q
    |||| |||||||||||||||||||||| ||| ||||||| |||||||||    
T  23013741 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaacct 23013789  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 18751420 - 18751346
Alignment:
Q  78 ttcttttgtaattt-gtctttaattatcatgagttactaaacc-taattggctaaaattctaagataaatctcta 150  Q
    |||||||||||||| ||||||| ||| ||||||| |||||||| ||||||| ||  ||||||||||||| |||||    
T  18751420 ttcttttgtaattttgtctttagttaccatgagtaactaaaccctaattggataggattctaagataaacctcta 18751346  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 13693017 - 13692972
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 117  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||    
T  13693017 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 13692972  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 23032116 - 23032067
Alignment:
Q  70 tattttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 119  Q
    |||||| |||||||||||||||||||||| |||  |||||| ||||||||    
T  23032116 tattttatttcttttgtaatttgtctttagttacgatgagtaactaaacc 23032067  T

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Target: scaffold0340 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 16374 - 16327
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 119  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||    
T  16374 ttttatttcttttgtaatttgtctttagttagcatgagtaactaaacc 16327  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 51119169 - 51119216
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 119  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||    
T  51119169 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaacc 51119216  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 20886238 - 20886193
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 117  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||    
T  20886238 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 20886193  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 23055270 - 23055314
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaa 116  Q
    |||| |||||||||||||||||||||| ||| ||||||| |||||    
T  23055270 ttttatttcttttgtaatttgtctttagttaccatgagtaactaa 23055314  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 24114920 - 24114958
Alignment:
Q  79 tcttttgtaatttgtctttaattatcatgagttactaaa 117  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  24114920 tcttttgtaatttgtctttagttatcatgagtaactaaa 24114958  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 28318365 - 28318325
Alignment:
Q  78 ttcttttgtaatttgtctttaattatcatgagttactaaac 118  Q
    ||||||||||||||||||||| ||| ||||||| |||||||    
T  28318365 ttcttttgtaatttgtctttagttaccatgagtaactaaac 28318325  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 23432 - 23388
Alignment:
Q  72 ttttgtttcttttgtaatttgtctttaattatcatgagttactaa 116  Q
    |||| |||||||||||||||||||||| ||| ||||||| |||||    
T  23432 ttttatttcttttgtaatttgtctttagttaccatgagtgactaa 23388  T

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