View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14942_low_13 (Length: 295)
Name: NF14942_low_13
Description: NF14942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14942_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 35307200 - 35307468
Alignment:
| Q |
17 |
caccattgatactataactcctaaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggttttt |
116 |
Q |
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| T |
35307200 |
caccattggtactataactcctaaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggttttt |
35307299 |
T |
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| Q |
117 |
atagtaattgttgtcaaaacttgttggagtgagagtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgca |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35307300 |
atagtaattgttatcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgca |
35307399 |
T |
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| Q |
217 |
aagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactctccttggcctatg |
285 |
Q |
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| T |
35307400 |
aagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactctccttggcctatg |
35307468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 35322201 - 35322469
Alignment:
| Q |
17 |
caccattgatactataactcctaaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggttttt |
116 |
Q |
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| T |
35322201 |
caccattggtactataactcctaaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaagattttt |
35322300 |
T |
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| Q |
117 |
atagtaattgttgtcaaaacttgttggagtgagagtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgca |
216 |
Q |
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| T |
35322301 |
atagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggtgctaaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgca |
35322400 |
T |
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| Q |
217 |
aagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactctccttggcctatg |
285 |
Q |
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| T |
35322401 |
aagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactctccttggcctatg |
35322469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 35311546 - 35311814
Alignment:
| Q |
20 |
cattgatactataactcctaaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttata |
119 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35311546 |
cattggtactataactcctaaccaaattatcttgagacccattattgaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttata |
35311645 |
T |
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| Q |
120 |
gtaattgttgtcaaaacttgttggagtgagagtatcaagaggtgctaaattagtgtca---ccaccagaaagaggacaatttgatttccttaaggttgca |
216 |
Q |
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| T |
35311646 |
ataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcg |
35311745 |
T |
|
| Q |
217 |
aagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactctccttggcctatg |
285 |
Q |
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| T |
35311746 |
aagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacaatcgacactctccttggcctatg |
35311814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 63 - 285
Target Start/End: Original strand, 35289448 - 35289670
Alignment:
| Q |
63 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
162 |
Q |
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|||||||||||||||||||||||| | ||| ||||| | |||||||||| ||||||||||||||||||||| | ||||| || || |||||||||| |
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| T |
35289448 |
attgaaaagagcttgatcagaatgaagaagtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggt |
35289547 |
T |
|
| Q |
163 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
262 |
Q |
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|| ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| |
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| T |
35289548 |
gccaaatttatgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctgaaaa |
35289647 |
T |
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| Q |
263 |
attggcactctccttggcctatg |
285 |
Q |
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|||| || ||| |||| |||||| |
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| T |
35289648 |
attgacattctgcttgacctatg |
35289670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 63 - 285
Target Start/End: Original strand, 35280103 - 35280325
Alignment:
| Q |
63 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
162 |
Q |
| |
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||||||||| ||||||||||||| | ||| ||||| | ||||| || | |||| ||||||||||||||| | |||| || || ||||||||| |
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| T |
35280103 |
attgaaaagtgcttgatcagaattaagaagtcctttattagcaactagatccctataataattgttgtcaaaagtaacaggagagacagaatcaagagga |
35280202 |
T |
|
| Q |
163 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
262 |
Q |
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|| ||||| |||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
35280203 |
gccaaatttgtgtcaccgccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaa |
35280302 |
T |
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| Q |
263 |
attggcactctccttggcctatg |
285 |
Q |
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|||| || ||| ||||||||||| |
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| T |
35280303 |
attgacattctgcttggcctatg |
35280325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 63 - 272
Target Start/End: Original strand, 35275336 - 35275545
Alignment:
| Q |
63 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
162 |
Q |
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|||||||||| ||||||||||||| | ||||||||| | |||| ||||| ||||| |||||||||||||| | |||||||||| || ||||| ||| |
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| T |
35275336 |
attgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggt |
35275435 |
T |
|
| Q |
163 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
262 |
Q |
| |
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|||||||| |||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| ||||||||||||||||| |
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| T |
35275436 |
gctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaa |
35275535 |
T |
|
| Q |
263 |
attggcactc |
272 |
Q |
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|||| ||||| |
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| T |
35275536 |
attgacactc |
35275545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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