View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14942_low_14 (Length: 293)
Name: NF14942_low_14
Description: NF14942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14942_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 12295173 - 12295444
Alignment:
| Q |
15 |
cagttataactcgaacactatagtattatttctaaattaccttcactgcacttccaaccccaatatatcttccattttcatcctcataacgtatatgatt |
114 |
Q |
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| T |
12295173 |
cagttataactcgaacactatagtattatttctaaattaccttcactgcgcttccaaccccaatatatcttccattttcatcctcataacgtatatgatt |
12295272 |
T |
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| Q |
115 |
tattgcaatttgtaatgaactatgtctaagcttcgaaaaaggccagtaattcaagcaaaggctctccaacatgataaagcaacgcccataccatatattg |
214 |
Q |
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| T |
12295273 |
tattgcaatttgtaatgaactatgtctaagcttcgaaaaaggccagtaattc-agcaaaggctctccaacatgataaagcaacccccataccatatattg |
12295371 |
T |
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| Q |
215 |
aactagaggacgtgggcagtaaagatcctcctgaaattaaatgttagagtaagttaactctattttagtataa |
287 |
Q |
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| T |
12295372 |
aactagaggacgtgggcagtaaagatcctcctgaaattaaatgttagagtaagttaactctattttagtataa |
12295444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 252
Target Start/End: Original strand, 35183443 - 35183602
Alignment:
| Q |
92 |
tcatcctcataacgtatatgatttattgcaatttgtaatgaactatgtctaagcttcgaaaaaggccagtaattcaagcaaaggctctccaacatgataa |
191 |
Q |
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| T |
35183443 |
tcatcctcgtaacccacatgattaattgcaatttctaatgccttctgtctaagcttggtgaaaggccagcaattca-gaaaaggctctcccacgtgataa |
35183541 |
T |
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| Q |
192 |
agcaacgcccataccatatattgaactagaggacgtgggcagtaaagatcctcctgaaatt |
252 |
Q |
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| T |
35183542 |
agaaatccccataacatatcttgaatcataggatgtgggtagtacagatcctcctgaaatt |
35183602 |
T |
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