View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14942_low_2 (Length: 493)
Name: NF14942_low_2
Description: NF14942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14942_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 489
Target Start/End: Complemental strand, 7132162 - 7131693
Alignment:
| Q |
20 |
tcagtcatatccaaatccataggtttgatcttattaggaagttcccaattaaaatgataaagtaataaagccacaggaagcataataccagctataccaa |
119 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7132162 |
tcagtcatatccaaatccataggtttcatcttattaggaagttcccaattaaaatgataaagtaataaagccacaggaagcataataccagctataccaa |
7132063 |
T |
|
| Q |
120 |
attgcaagccagggcaaattcttctacctgctccaaaaggaagatattcaaaattattccctctaaaatcaatagtactaccttcaaatctctctggaat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
7132062 |
attgcaagccagggcaaattcttctacctgctccaaaaggaagatattcaaaattattccctctaaaatcaatagaactaccttcaaatctctctggatt |
7131963 |
T |
|
| Q |
220 |
aaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7131962 |
aaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttg |
7131863 |
T |
|
| Q |
320 |
gttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaatat |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7131862 |
gttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaatat |
7131763 |
T |
|
| Q |
420 |
cattttcagatataatttcttttcctttgcatgcttctcttatttcagcttgtgctttgttcatctcact |
489 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
7131762 |
cattttcagatataatttcttttcctttgcatgcttctcttatttcagcttgtgccttgttcatcacact |
7131693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 20 - 477
Target Start/End: Complemental strand, 7154656 - 7154199
Alignment:
| Q |
20 |
tcagtcatatccaaatccataggtttgatcttattaggaagttcccaattaaaatgataaagtaataaagccacaggaagcataataccagctataccaa |
119 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||| || |||||||||||||||||||| ||||||||||| | ||||||||||| || ||||||||||| |
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| T |
7154656 |
tcagtcatatccaaatcctcaggtttcatctgatttggtagttcccaattaaaatgatatagtaataaagcaagaggaagcataacactagctataccaa |
7154557 |
T |
|
| Q |
120 |
attgcaagccagggcaaattcttctacctgctccaaaaggaagatattcaaaattattccctctaaaatcaatagtactaccttcaaatctctctggaat |
219 |
Q |
| |
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|| || ||| || || |||||||| || || |||||||||| ||| ||||||||||| ||| | |||||||| |||||| ||||| ||||||||||| |
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| T |
7154556 |
atgacatgcctggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaat |
7154457 |
T |
|
| Q |
220 |
aaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttg |
319 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||||| |||||| |||| ||||| |||||||| ||||||||||| ||||||||||| ||| || |
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|
| T |
7154456 |
gaacatctcagcatcagtccaatattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatg |
7154357 |
T |
|
| Q |
320 |
gttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaatat |
419 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||| | ||||| ||||||||| | || ||||| |||||||| || | ||| | ||||| | | || |
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| T |
7154356 |
gtcaattcagtgcattctctagggaccaataaaggtgaaggtgggtgtaacctcattgtttctttgatcactaacttaaagtaagttagttcatttagat |
7154257 |
T |
|
| Q |
420 |
cattttcagatataatttcttttcctttgcatgcttctcttatttcagcttgtgcttt |
477 |
Q |
| |
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|| ||||||||| |||| ||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
7154256 |
cagattcagatattattttctttcctttgaatgcttctcttagttcagcttgtgcttt |
7154199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 398
Target Start/End: Complemental strand, 7141703 - 7141508
Alignment:
| Q |
203 |
tcaaatctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatat |
302 |
Q |
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||||| ||||||||||||||| ||||||||||| ||||||||| |||||| ||| | || ||||| |||| || | |||| |||| ||||||||||||| |
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| T |
7141703 |
tcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatat |
7141604 |
T |
|
| Q |
303 |
cataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaatttta |
398 |
Q |
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|||| ||||| || ||||||| ||| |||| ||| || | || ||||||| ||||| ||||||||| || || ||||| |||||||| |||| |
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| T |
7141603 |
catacccatctattttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaacctcaatgtttctttgatcactaacttta |
7141508 |
T |
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