View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14942_low_6 (Length: 380)
Name: NF14942_low_6
Description: NF14942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14942_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 35 - 365
Target Start/End: Complemental strand, 3411403 - 3411073
Alignment:
| Q |
35 |
aatcactaactatatctcaaccaccactagtaattactgttgcaacactctctctgattgatcgtcccccacctcatccactgccaataaatatggcctc |
134 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3411403 |
aatcactaactatacctcaaccatcactatccattattgttacaacactctctctgattgatcgtcccccacctcatccactgtcaataaatatggcctc |
3411304 |
T |
|
| Q |
135 |
catggtcacatgacaattttgtgttttggttactctatccctgtccaacttgagatctaataatcgtgttggagattttatgaaattcttgatttgttta |
234 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3411303 |
catagtcacatgacaattttgtgttttggttactctatccctgtcctacttgagatctaataatcgtgttggagattttatgaaattcttgttttgttta |
3411204 |
T |
|
| Q |
235 |
tttgcatgtgttatattgttagttttaatttgcttcaaatttgtactccatgtgttcactaaaatgcttgagttgtactccatgtgtttgctaaaatgtt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3411203 |
tttgcatgtgttatattgttagttttaatttgcttcaaatttgtactccatgtgtttactaaaatgcttgagttgtactccatgtgtttgcttaaatgtt |
3411104 |
T |
|
| Q |
335 |
caagagttactcgttttgtcgggaccctatt |
365 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
3411103 |
caagagttactcgttttgttgggaccctatt |
3411073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 29423499 - 29423456
Alignment:
| Q |
245 |
ttatattgttagttttaatttgcttcaaatttgtactccatgtg |
288 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
29423499 |
ttatattgttatttttaatttgtttcaaatttgtacttcatgtg |
29423456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University