View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14942_low_7 (Length: 361)
Name: NF14942_low_7
Description: NF14942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14942_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 111 - 341
Target Start/End: Original strand, 27837508 - 27837738
Alignment:
| Q |
111 |
gttaagttatatcaatatagcataaatgataaaaagtatacaatagcttcttcnnnnnnngtgaagaaagcaatgcttaataaacagcaactaacaacag |
210 |
Q |
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| T |
27837508 |
gttaagttatatcaatatagcgtaaaggatcaaaagtatacagtagcttcttctttttttgtgaagaaagcaatgcttaataaacagcaactaacaacag |
27837607 |
T |
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| Q |
211 |
attaaaggaaaaactatatacataaacaatgaagaaactcacaaattttgggcatggccttgttatggaggaaaccagagagtctccatggacgtatgaa |
310 |
Q |
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| T |
27837608 |
attaaaggaaaaactatatacataaacaatgaagaaactcacaaattttgggcatggccttgttatggaggaaaccagagagtctccatggacgtatgaa |
27837707 |
T |
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| Q |
311 |
gccactaaaggtgcctttgatcggagaactg |
341 |
Q |
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| T |
27837708 |
gccactaaaggtgcctttgatcggagaactg |
27837738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 27837411 - 27837460
Alignment:
| Q |
13 |
aaaatactatcaaaaccaaggattgtgaaacaaacaaagctaaattatac |
62 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
27837411 |
aaaatactatcaaaaccaaggattgtgagacatacaaagctaaattatac |
27837460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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