View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14942_low_8 (Length: 348)
Name: NF14942_low_8
Description: NF14942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14942_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 159 - 331
Target Start/End: Complemental strand, 32737788 - 32737613
Alignment:
| Q |
159 |
aaccaatgaattatttgttgtttttcttataagtttacaaccatactcgagaaaatttaaaccccatctttcaaattacaatgtccaactc---ctacca |
255 |
Q |
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| T |
32737788 |
aaccaatgaattatttgttgtttttcttataagtttacaaccatactcgagaaaatttaaaccccatctttcaaattacaatgtccaactcctactacca |
32737689 |
T |
|
| Q |
256 |
ctaagaaaacatatcttaagcagacgacgtcaatataaaatagagggagcatggtattatgatttatggtgttgct |
331 |
Q |
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| T |
32737688 |
ctaagaaaacatatcttaagcagacgacgtcaatataaaacagagggagcatggtattatgatttatggtgttgct |
32737613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 32737868 - 32737787
Alignment:
| Q |
42 |
aagttaatgagtcaaaaatgaaaataatttgttgtaatcaatgtaatcttttatgtattgatacaaaattcaataaaataaa |
123 |
Q |
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| T |
32737868 |
aagttaatgagtcaaaaatgaaaataatttgttgtaatcaatgtaatcttttatgtattgatacagaattcaataaaataaa |
32737787 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 53683949 - 53683993
Alignment:
| Q |
42 |
aagttaatgagtcaaaaatgaaaataatttgttgtaatcaatgta |
86 |
Q |
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| T |
53683949 |
aagttaatgagccaaaagtgaaaataatttgttttaattaatgta |
53683993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 6818587 - 6818631
Alignment:
| Q |
42 |
aagttaatgagtcaaaaatgaaaataatttgttgtaatcaatgta |
86 |
Q |
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| T |
6818587 |
aagttaatgagttaaaaatgaaaataatttgttgtaatcaatgta |
6818631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 47206743 - 47206787
Alignment:
| Q |
42 |
aagttaatgagtcaaaaatgaaaataatttgttgtaatcaatgta |
86 |
Q |
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||||||||||||||||||| |||||| ||||||||||| |||||| |
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| T |
47206743 |
aagttaatgagtcaaaaataaaaatactttgttgtaattaatgta |
47206787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 37316136 - 37316171
Alignment:
| Q |
44 |
gttaatgagtcaaaaatgaaaataatttgttgtaat |
79 |
Q |
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|
| T |
37316136 |
gttaatgagtcaaaagtgaaaataatttgttgtaat |
37316171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 10783600 - 10783642
Alignment:
| Q |
42 |
aagttaatgagtcaaaaatgaaaataatttgttgtaatcaatg |
84 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||| |||| |
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|
| T |
10783600 |
aagttaatgagtcaaaaatggaaataatttattgtaattaatg |
10783642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 31820694 - 31820654
Alignment:
| Q |
42 |
aagttaatgagtcaaaaatgaaaataatttgttgtaatcaa |
82 |
Q |
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|||||||| |||||||| || |||||||||||||||||||| |
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|
| T |
31820694 |
aagttaataagtcaaaagtggaaataatttgttgtaatcaa |
31820654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 34806211 - 34806248
Alignment:
| Q |
42 |
aagttaatgagtcaaaaatgaaaataatttgttgtaat |
79 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
34806211 |
aagttaatgagtcaaaaatgaaaatattttattgtaat |
34806248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 50685604 - 50685648
Alignment:
| Q |
42 |
aagttaatgagtcaaaaatgaaaataatttgttgtaatcaatgta |
86 |
Q |
| |
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||||||||||| ||||| || ||||||||||||||||| |||||| |
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| T |
50685604 |
aagttaatgagccaaaagtggaaataatttgttgtaataaatgta |
50685648 |
T |
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