View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14943_high_11 (Length: 381)

Name: NF14943_high_11
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14943_high_11
NF14943_high_11
[»] chr2 (17 HSPs)
chr2 (34-365)||(32615770-32616123)
chr2 (258-317)||(19243611-19243670)
chr2 (202-251)||(41042024-41042073)
chr2 (203-251)||(34652038-34652086)
chr2 (202-250)||(41032958-41033006)
chr2 (203-251)||(41809247-41809295)
chr2 (274-318)||(42852634-42852678)
chr2 (216-251)||(1939334-1939369)
chr2 (216-251)||(10285893-10285928)
chr2 (213-246)||(3611367-3611400)
chr2 (203-244)||(16867759-16867800)
chr2 (324-365)||(32634449-32634490)
chr2 (208-253)||(33525967-33526012)
chr2 (203-251)||(787352-787400)
chr2 (203-251)||(9556259-9556307)
chr2 (274-318)||(15370255-15370299)
chr2 (274-318)||(22878192-22878236)
[»] chr7 (14 HSPs)
chr7 (210-318)||(33894654-33894765)
chr7 (216-295)||(48157075-48157157)
chr7 (258-318)||(30751597-30751657)
chr7 (216-251)||(24363603-24363638)
chr7 (213-251)||(27496409-27496447)
chr7 (213-251)||(27503067-27503105)
chr7 (265-318)||(37064146-37064199)
chr7 (258-318)||(1418497-1418557)
chr7 (219-251)||(3468650-3468682)
chr7 (216-252)||(15740557-15740593)
chr7 (258-318)||(36598288-36598348)
chr7 (217-249)||(39281003-39281035)
chr7 (211-251)||(44151482-44151522)
chr7 (219-251)||(45078314-45078346)
[»] chr3 (15 HSPs)
chr3 (216-318)||(29771871-29771976)
chr3 (216-297)||(37273167-37273251)
chr3 (216-253)||(21862175-21862212)
chr3 (263-318)||(20194965-20195020)
chr3 (205-251)||(11039341-11039387)
chr3 (218-251)||(36200131-36200164)
chr3 (216-253)||(43397860-43397897)
chr3 (274-318)||(21872227-21872271)
chr3 (274-318)||(22667497-22667541)
chr3 (274-318)||(22724136-22724180)
chr3 (213-249)||(26542567-26542603)
chr3 (219-251)||(37155037-37155069)
chr3 (219-251)||(37200392-37200424)
chr3 (215-251)||(41671342-41671378)
chr3 (211-251)||(42745066-42745106)
[»] chr6 (14 HSPs)
chr6 (215-318)||(24973959-24974065)
chr6 (205-251)||(2160939-2160985)
chr6 (203-251)||(17241254-17241302)
chr6 (211-251)||(31583707-31583747)
chr6 (216-318)||(8420129-8420234)
chr6 (217-251)||(5566179-5566213)
chr6 (216-251)||(9667987-9668022)
chr6 (216-251)||(27909640-27909675)
chr6 (264-318)||(32171551-32171605)
chr6 (213-251)||(34939774-34939812)
chr6 (216-249)||(2167162-2167195)
chr6 (216-249)||(2178795-2178828)
chr6 (216-252)||(1575783-1575819)
chr6 (203-251)||(6647407-6647455)
[»] scaffold0286 (1 HSPs)
scaffold0286 (205-251)||(16132-16178)
[»] chr5 (10 HSPs)
chr5 (213-248)||(29590634-29590669)
chr5 (211-251)||(35963269-35963309)
chr5 (210-251)||(15074751-15074792)
chr5 (216-253)||(18704036-18704073)
chr5 (203-244)||(33533548-33533589)
chr5 (215-251)||(1899186-1899222)
chr5 (214-250)||(2092548-2092584)
chr5 (216-252)||(8651354-8651390)
chr5 (216-248)||(31694551-31694583)
chr5 (203-243)||(38104867-38104907)
[»] chr8 (14 HSPs)
chr8 (213-251)||(25869268-25869306)
chr8 (213-249)||(28769343-28769379)
chr8 (203-251)||(30277247-30277295)
chr8 (216-251)||(3600740-3600775)
chr8 (218-253)||(11185256-11185291)
chr8 (216-251)||(14339607-14339642)
chr8 (213-244)||(38336060-38336091)
chr8 (216-253)||(5088885-5088922)
chr8 (203-248)||(8062349-8062394)
chr8 (218-251)||(12361227-12361260)
chr8 (213-250)||(40356955-40356992)
chr8 (274-318)||(2364392-2364436)
chr8 (211-251)||(13000426-13000466)
chr8 (125-185)||(26215427-26215487)
[»] scaffold0311 (1 HSPs)
scaffold0311 (214-251)||(10619-10656)
[»] chr1 (25 HSPs)
chr1 (213-250)||(11211148-11211185)
chr1 (203-251)||(28689454-28689502)
chr1 (263-318)||(27807198-27807253)
chr1 (216-251)||(35017609-35017644)
chr1 (211-250)||(39347970-39348009)
chr1 (279-318)||(44815235-44815274)
chr1 (213-251)||(3244929-3244967)
chr1 (217-251)||(12477289-12477323)
chr1 (213-251)||(15579512-15579550)
chr1 (216-250)||(33108625-33108659)
chr1 (215-249)||(35669004-35669038)
chr1 (213-251)||(35925720-35925758)
chr1 (210-251)||(11695888-11695929)
chr1 (218-251)||(17420238-17420271)
chr1 (122-199)||(33527212-33527289)
chr1 (215-251)||(2522661-2522697)
chr1 (258-318)||(4549473-4549533)
chr1 (215-251)||(4768831-4768867)
chr1 (211-251)||(4868428-4868468)
chr1 (258-318)||(5157150-5157210)
chr1 (203-251)||(6279419-6279467)
chr1 (258-318)||(23373245-23373305)
chr1 (274-318)||(24460333-24460377)
chr1 (124-188)||(25719464-25719528)
chr1 (211-251)||(47917264-47917304)
[»] chr4 (9 HSPs)
chr4 (203-251)||(29467626-29467674)
chr4 (213-251)||(7694012-7694050)
chr4 (213-251)||(39438540-39438578)
chr4 (216-249)||(5131254-5131287)
chr4 (258-295)||(8074841-8074878)
chr4 (219-251)||(20656073-20656105)
chr4 (274-318)||(30770983-30771027)
chr4 (210-250)||(43824310-43824350)
chr4 (211-251)||(55547046-55547086)
[»] scaffold0254 (1 HSPs)
scaffold0254 (216-249)||(3506-3539)
[»] scaffold0147 (1 HSPs)
scaffold0147 (203-251)||(12706-12754)


Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 34 - 365
Target Start/End: Original strand, 32615770 - 32616123
Alignment:
Q  34 gtgatgcaattcaaagcctgacatgattgttatatattataataatatttttcttgca--atctactattacatgatataacgtgcttctagcataagcg 131  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  32615770 gtgatgcaattcaaagcctgacatgattgttatatattatattgatatttttcttgcacaatctactattacatgatataacgtgcttctagcataagcg 32615869  T
Q  132 cgtatgtataagctagtactgcaacaaatgataaaatagagtaaaactattttcataaattctataagttttatcttagaaagtttatggaaataagttg 231  Q
    ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32615870 cgtatgtataagctattactgtaacaaatgataaaataaagtaaaactattttcataaattctataagttttatcttagaaagtttatggaaataagttg 32615969  T
Q  232 aaaacaacttatggacatgttagtcatttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaata-------------- 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  32615970 aaaacaacttatggacatgttagtcatttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaataactcaatacaatct 32616069  T
Q  318 ------attctaaacagagttttatcaaaccatggattgaacacgtgagaaaag 365  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32616070 tattgtattctaaacagagttttatcaaaccatggattgaacacgtgagaaaag 32616123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 19243611 - 19243670
Alignment:
Q  258 tttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaata 317  Q
    ||||||||||||| | |||||||||||| |||||||||||||||  ||||||||||||||    
T  19243611 tttctataagctcgcccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 19243670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 41042073 - 41042024
Alignment:
Q  202 ttatcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||| || ||||||||||||||||||||||||| || ||||||||||    
T  41042073 ttatcttggagagtttatggaaataagttgaaaacagctgatggacatgt 41042024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 34652086 - 34652038
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||| || || |||||||||||||||||||||| |||||||||||||    
T  34652086 tatcttggagagcttatggaaataagttgaaaacagcttatggacatgt 34652038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 41033006 - 41032958
Alignment:
Q  202 ttatcttagaaagtttatggaaataagttgaaaacaacttatggacatg 250  Q
    |||||||| | |||||||||||||||| |||||||||||||| ||||||    
T  41033006 ttatcttatagagtttatggaaataagctgaaaacaacttatagacatg 41032958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 41809295 - 41809247
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||| ||||||||||||| | ||||||||||||| ||||||    
T  41809295 tatcttagaaagcttatggaaataagctaaaaacaacttatgaacatgt 41809247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 42852678 - 42852634
Alignment:
Q  274 caaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||    
T  42852678 caaacagtctcacaagtgcttatgccagcagataagttcaaataa 42852634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 1939369 - 1939334
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||||||||| |||||||||||||    
T  1939369 ttatggaaataagttgaaaacagcttatggacatgt 1939334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 10285893 - 10285928
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||||||||| |||||||||||||    
T  10285893 ttatggaaataagttgaaaacagcttatggacatgt 10285928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 3611367 - 3611400
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatgga 246  Q
    ||||| ||||||||||||||||||||||||||||    
T  3611367 agtttgtggaaataagttgaaaacaacttatgga 3611400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 16867759 - 16867800
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatg 244  Q
    |||||| || || |||||||||||||||||||||||||||||    
T  16867759 tatcttggagagcttatggaaataagttgaaaacaacttatg 16867800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 32634449 - 32634490
Alignment:
Q  324 aacagagttttatcaaaccatggattgaacacgtgagaaaag 365  Q
    |||||||||||||||||||||||||||| |||  ||||||||    
T  32634449 aacagagttttatcaaaccatggattgagcacacgagaaaag 32634490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 33526012 - 33525967
Alignment:
Q  208 tagaaagtttatggaaataagttgaaaacaacttatggacatgtta 253  Q
    ||||| |||||| |||||||| ||||| ||||||||||||||||||    
T  33526012 tagaaggtttatagaaataagctgaaaccaacttatggacatgtta 33525967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 787352 - 787400
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||  ||||||||| ||||| |||||||| |||||||||||||    
T  787352 tatcttagatggtttatggagataagctgaaaacagcttatggacatgt 787400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 9556259 - 9556307
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| ||||||| ||||| ||||||||||||| | ||||||||||||||    
T  9556259 tatcctagaaagcttatgaaaataagttgaaatctacttatggacatgt 9556307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 15370299 - 15370255
Alignment:
Q  274 caaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    |||||||||||||||||||||||| |||  |||||| ||||||||    
T  15370299 caaacagtctcacaaatgcttatgccagtagataagctcaaataa 15370255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 22878192 - 22878236
Alignment:
Q  274 caaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||||||||||| ||||||||||||  |||||| ||||||||    
T  22878192 caaacagtctcacaagtgcttatgtcagtggataagctcaaataa 22878236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 33894654 - 33894765
Alignment:
Q  210 gaaagtttatggaaataagttgaaaacaacttatggacatgtta---gtcatttctataagctcccacaaacagtctcacaaatgcttatgtcagctgat 306  Q
    |||||||||| |||||||| |||||||||||||||||||||| |   |   |||  |||||||| ||||||||||||||||| |||||||||||  ||||    
T  33894654 gaaagtttattgaaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgtcatttgat 33894753  T
Q  307 aagttcaaataa 318  Q
    ||| ||||||||    
T  33894754 aagctcaaataa 33894765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 48157157 - 48157075
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatg---ttagtcatttctataagctcccacaaacagtctcacaaatgctta 295  Q
    ||||||||||||| |||||||| ||||||||||||   | |||  ||||||||||||| | ||||||||||||||||||||||    
T  48157157 ttatggaaataagctgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacagtctcacaaatgctta 48157075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 30751597 - 30751657
Alignment:
Q  258 tttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||||||||| | ||||||||| ||||| ||||||||||||  |||||||| ||||||    
T  30751597 tttctataagctctcccaaacagtcgcacaagtgcttatgtcagtagataagtttaaataa 30751657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 24363638 - 24363603
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||||||| ||||||||||||||||||||||    
T  24363638 ttatggaaataagctgaaaacaacttatggacatgt 24363603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 27496447 - 27496409
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  27496447 agtttatggaaataagctgaaaacagcttatggacatgt 27496409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 27503105 - 27503067
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  27503105 agtttatggaaataagctgaaaacagcttatggacatgt 27503067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 37064199 - 37064146
Alignment:
Q  265 aagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    |||||| ||||||| ||||||||| |||||||||||   |||||||||||||||    
T  37064199 aagctctcacaaaccgtctcacaagtgcttatgtcactagataagttcaaataa 37064146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 1418497 - 1418557
Alignment:
Q  258 tttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||||||||| ||||||||| |||| || |||||||| |||  |||||| ||||||||    
T  1418497 tttctataagctctcacaaacagcctcataagtgcttatgccagtagataagctcaaataa 1418557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 3468650 - 3468682
Alignment:
Q  219 tggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||||||| |||||||||||||||||||    
T  3468650 tggaaataagttggaaacaacttatggacatgt 3468682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 15740593 - 15740557
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgtt 252  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  15740593 ttatgaaaataagttgaaaacaccttatggacatgtt 15740557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 36598348 - 36598288
Alignment:
Q  258 tttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    |||| |||||||| | |||||| |||||||| ||||||||||||  | |||||||||||||    
T  36598348 tttccataagctctctcaaacaatctcacaattgcttatgtcagtagttaagttcaaataa 36598288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 39281003 - 39281035
Alignment:
Q  217 tatggaaataagttgaaaacaacttatggacat 249  Q
    |||||||||||| ||||||||||||||||||||    
T  39281003 tatggaaataagctgaaaacaacttatggacat 39281035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 44151522 - 44151482
Alignment:
Q  211 aaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| ||||||||||||| |||||||| |||||||||||||    
T  44151522 aaagcttatggaaataagctgaaaacatcttatggacatgt 44151482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 45078314 - 45078346
Alignment:
Q  219 tggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||||||||||||| |||||||||||||    
T  45078314 tggaaataagttgaaaacagcttatggacatgt 45078346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 29771871 - 29771976
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatg---ttagtcatttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttc 312  Q
    |||||||||||||||||||||||||||||||||||   | |||  ||||| ||||||| || ||| |||||||| | |  ||||||||| ||||||||||    
T  29771871 ttatggaaataagttgaaaacaacttatggacatgtcctaagttgtttctttaagctctcataaatagtctcacgagtatttatgtcagttgataagttc 29771970  T
Q  313 aaataa 318  Q
    ||||||    
T  29771971 aaataa 29771976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 37273167 - 37273251
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatg---ttagtcatttctataagctcccacaaacagtctcacaaatgcttatg 297  Q
    |||||||||||||||||||||||||||||||||||   | |||  |||| |||||||| | ||||||||||||| | ||||||||    
T  37273167 ttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatg 37273251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 21862212 - 21862175
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgtta 253  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  21862212 ttatggaaataagctgaaaacaacttatggacatgtta 21862175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 20195020 - 20194965
Alignment:
Q  263 ataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    |||||||| ||||||||||||||||| ||||||||  ||  |||||||||||||||    
T  20195020 ataagctctcacaaacagtctcacaactgcttatgcaagaagataagttcaaataa 20194965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 11039387 - 11039341
Alignment:
Q  205 tcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||| || ||||||| ||||| ||||||||||||||||||||||    
T  11039387 tcttagatagcttatggagataagctgaaaacaacttatggacatgt 11039341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 36200131 - 36200164
Alignment:
Q  218 atggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||||| ||||||||||||||||||||||    
T  36200131 atggaaataagctgaaaacaacttatggacatgt 36200164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 43397860 - 43397897
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgtta 253  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  43397860 ttatggaagtaagttgaaaacaatttatggacatgtta 43397897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 21872271 - 21872227
Alignment:
Q  274 caaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||||||||||| ||||||||||||  |||||| ||||||||    
T  21872271 caaacagtctcacaagtgcttatgtcagtagataagatcaaataa 21872227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 22667497 - 22667541
Alignment:
Q  274 caaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||||||||||| ||||||||||||  |||||| ||||||||    
T  22667497 caaacagtctcacaagtgcttatgtcagtagataagctcaaataa 22667541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 22724136 - 22724180
Alignment:
Q  274 caaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||||||||||| ||||||||||||  |||||| ||||||||    
T  22724136 caaacagtctcacaagtgcttatgtcagtagataagctcaaataa 22724180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 26542567 - 26542603
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacat 249  Q
    |||||||||||||||||||||||||| |||| |||||    
T  26542567 agtttatggaaataagttgaaaacaagttatagacat 26542603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 37155037 - 37155069
Alignment:
Q  219 tggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||||| |||||||||||||||||||||    
T  37155037 tggaaataagtagaaaacaacttatggacatgt 37155069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 37200392 - 37200424
Alignment:
Q  219 tggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||||| |||||||||||||||||||||    
T  37200392 tggaaataagtagaaaacaacttatggacatgt 37200424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 41671342 - 41671378
Alignment:
Q  215 tttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||| |||||||||||||||||||||| |||||||    
T  41671342 tttatgaaaataagttgaaaacaacttatagacatgt 41671378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 42745066 - 42745106
Alignment:
Q  211 aaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| ||||||||||||| ||||||||||||||| ||||||    
T  42745066 aaagcttatggaaataagatgaaaacaacttatgaacatgt 42745106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 318
Target Start/End: Complemental strand, 24974065 - 24973959
Alignment:
Q  215 tttatggaaataagttgaaaacaacttatggacatgtta---gtcatttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagtt 311  Q
    |||||||||||||| |||||  ||||||| |||||||||   || ||| ||||||||||   |||||| ||| |||| ||||||||||||| ||||||||    
T  24974065 tttatggaaataagctgaaagaaacttatcgacatgttataagttattcctataagctctaccaaacaatcttacaagtgcttatgtcagcagataagtt 24973966  T
Q  312 caaataa 318  Q
    |||||||    
T  24973965 caaataa 24973959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 2160985 - 2160939
Alignment:
Q  205 tcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  2160985 tcttggaaagattatggaaataagttgaaaacaacttatggacatgt 2160939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 17241302 - 17241254
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||| || |||||||||||||||||||||||||||||||| ||||||    
T  17241302 tatcttggagagtttatggaaataagttgaaaacaacttatgaacatgt 17241254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 31583707 - 31583747
Alignment:
Q  211 aaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  31583707 aaagcttatggaaataagttgaaaacaacttatggacatgt 31583747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 8420234 - 8420129
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgtta---gtcatttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttc 312  Q
    |||||||||||||||||||| | ||| ||||||||| |   |  |||||||||||||| ||| ||||||||||||| || ||||||||   |||||| ||    
T  8420234 ttatggaaataagttgaaaatagcttgtggacatgtcataagctatttctataagctctcactaacagtctcacaagtgtttatgtcaatagataagctc 8420135  T
Q  313 aaataa 318  Q
    ||||||    
T  8420134 aaataa 8420129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 5566213 - 5566179
Alignment:
Q  217 tatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||||||||||||||||||||||    
T  5566213 tatggaaataagttgaaaacaacttatggacatgt 5566179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 9668022 - 9667987
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||||||||| |||||||||||||    
T  9668022 ttatggaaataagttgaaaacagcttatggacatgt 9667987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 27909675 - 27909640
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27909675 ttatggaaataagctgaaaacaacttatggacatgt 27909640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 32171551 - 32171605
Alignment:
Q  264 taagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||| | ||| ||||||||||||||||||||||||   ||||||||||||||    
T  32171551 taagctctcccaaccagtctcacaaatgcttatgtcagtaaataagttcaaataa 32171605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 34939774 - 34939812
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  34939774 agtttatggaaataagctgaaaacaatttatggacatgt 34939812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 2167195 - 2167162
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacat 249  Q
    ||||||||||||| ||||||||||||||||||||    
T  2167195 ttatggaaataagctgaaaacaacttatggacat 2167162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 2178828 - 2178795
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacat 249  Q
    ||||||||||||| ||||||||||||||||||||    
T  2178828 ttatggaaataagctgaaaacaacttatggacat 2178795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 1575783 - 1575819
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgtt 252  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  1575783 ttatgaaaataagttgaaaacaccttatggacatgtt 1575819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 6647407 - 6647455
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||| || ||||| |||||||||||||||| |||||| ||||||    
T  6647407 tatcttagagagcttatgaaaataagttgaaaacatcttatgaacatgt 6647455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 16132 - 16178
Alignment:
Q  205 tcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  16132 tcttggaaagattatggaaataagttgaaaacaacttatggacatgt 16178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 29590669 - 29590634
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggaca 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  29590669 agtttatggaaataagttgaaaacaacttatggaca 29590634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 35963269 - 35963309
Alignment:
Q  211 aaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  35963269 aaagcttatggaaataagctgaaaacaacttatggacatgt 35963309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 15074792 - 15074751
Alignment:
Q  210 gaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||| ||||||||||||| |||||||| |||||||||||||    
T  15074792 gaaagcttatggaaataagctgaaaacagcttatggacatgt 15074751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 18704073 - 18704036
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgtta 253  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  18704073 ttatggaaataagctgaaaacaacttatagacatgtta 18704036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 33533589 - 33533548
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatg 244  Q
    |||||| || || |||||||||||||||||||||||||||||    
T  33533589 tatcttggagagcttatggaaataagttgaaaacaacttatg 33533548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 1899186 - 1899222
Alignment:
Q  215 tttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  1899186 tttatggaaataagctgaaaacaacttatgcacatgt 1899222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 2092584 - 2092548
Alignment:
Q  214 gtttatggaaataagttgaaaacaacttatggacatg 250  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  2092584 gtttatgaaaaaaagttgaaaacaacttatggacatg 2092548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 8651390 - 8651354
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgtt 252  Q
    ||||||||||| | |||||||||||||||||||||||    
T  8651390 ttatggaaatatgctgaaaacaacttatggacatgtt 8651354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 31694551 - 31694583
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggaca 248  Q
    ||||| |||||||||||||||||||||||||||    
T  31694551 ttatgaaaataagttgaaaacaacttatggaca 31694583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 38104907 - 38104867
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttat 243  Q
    ||||||||| || ||||||||||||| ||||||||||||||    
T  38104907 tatcttagagagcttatggaaataagctgaaaacaacttat 38104867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 25869306 - 25869268
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  25869306 agtttatggaaataagctgaaaacaacttatggacatgt 25869268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 28769379 - 28769343
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacat 249  Q
    |||||||||||||||| ||||||||||||||||||||    
T  28769379 agtttatggaaataagctgaaaacaacttatggacat 28769343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 30277295 - 30277247
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| |||| |||||||||||||||| |||||||||||||||| |||||    
T  30277295 tatcctagagagtttatggaaataagctgaaaacaacttatggccatgt 30277247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 3600775 - 3600740
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||| ||||||||||||||||||||||||||||||    
T  3600775 ttatgaaaataagttgaaaacaacttatggacatgt 3600740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 253
Target Start/End: Original strand, 11185256 - 11185291
Alignment:
Q  218 atggaaataagttgaaaacaacttatggacatgtta 253  Q
    ||||||||||||||||||||||||||| ||||||||    
T  11185256 atggaaataagttgaaaacaacttatgaacatgtta 11185291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 14339642 - 14339607
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||| ||||||||||||||||||||||||||||||    
T  14339642 ttatgaaaataagttgaaaacaacttatggacatgt 14339607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 244
Target Start/End: Complemental strand, 38336091 - 38336060
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatg 244  Q
    ||||||||||||||||||||||||||||||||    
T  38336091 agtttatggaaataagttgaaaacaacttatg 38336060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 5088885 - 5088922
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgtta 253  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  5088885 ttattgaaataagttgaaaacagcttatggacatgtta 5088922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 8062349 - 8062394
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatggaca 248  Q
    ||||||||| || ||||||||||||| |||||||| ||||||||||    
T  8062349 tatcttagagagattatggaaataagctgaaaacatcttatggaca 8062394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 12361227 - 12361260
Alignment:
Q  218 atggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||||||| |||||||||||||    
T  12361227 atggaaataagttgaaaacagcttatggacatgt 12361260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 40356955 - 40356992
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacatg 250  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  40356955 agtttatggaaatatgttgaaaacagcttatggacatg 40356992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 2364436 - 2364392
Alignment:
Q  274 caaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||||||||||| | ||||||||||  |||||||||||||||    
T  2364436 caaacagtctcacaagtacttatgtcagaagataagttcaaataa 2364392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 13000466 - 13000426
Alignment:
Q  211 aaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| ||||||||||||| |||||||||||| |||||||||    
T  13000466 aaagcttatggaaataagctgaaaacaacttgtggacatgt 13000426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 26215427 - 26215487
Alignment:
Q  125 ataagcgcgtatgtataagctagtactgcaacaaatgataaaatagagtaaaactattttc 185  Q
    |||||||| ||||||||||||| | ||  |||||| ||||||||| ||| |||||||||||    
T  26215427 ataagcgcttatgtataagctatttctataacaaaagataaaataaagttaaactattttc 26215487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 10656 - 10619
Alignment:
Q  214 gtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10656 gtttatggaaataagctgaaaacaacttatggacatgt 10619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 11211148 - 11211185
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacatg 250  Q
    |||||||||||||||||| |||||||||||||||||||    
T  11211148 agtttatggaaataagttaaaaacaacttatggacatg 11211185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 28689502 - 28689454
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||| ||||| ||||| ||||||| ||||||||||||||||||||||    
T  28689502 tatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgt 28689454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 27807198 - 27807253
Alignment:
Q  263 ataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    |||||||| | |||||||||| |||||||||||||||||  || ||||||||||||    
T  27807198 ataagctctctcaaacagtcttacaaatgcttatgtcagtagaaaagttcaaataa 27807253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 35017609 - 35017644
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||||||| |||||||||||||||    
T  35017609 ttatggaaataagttgaaaataacttatggacatgt 35017644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 39348009 - 39347970
Alignment:
Q  211 aaagtttatggaaataagttgaaaacaacttatggacatg 250  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  39348009 aaagcttatggaaataagctgaaaacaacttatggacatg 39347970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 44815274 - 44815235
Alignment:
Q  279 agtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  44815274 agtctcacaaatgcttatgtcagtagataagttcaaataa 44815235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 3244929 - 3244967
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  3244929 agtttatggaaataagttgaaaatagcttatggacatgt 3244967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 12477323 - 12477289
Alignment:
Q  217 tatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||| ||||||||||||||||||||||    
T  12477323 tatggaaataagctgaaaacaacttatggacatgt 12477289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 15579512 - 15579550
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  15579512 agtttatggaaataagctgagaacaacttatggacatgt 15579550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 33108659 - 33108625
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacatg 250  Q
    |||||||||||||||||||||||||||||| ||||    
T  33108659 ttatggaaataagttgaaaacaacttatggtcatg 33108625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 35669004 - 35669038
Alignment:
Q  215 tttatggaaataagttgaaaacaacttatggacat 249  Q
    |||||||||||||||||||||||| ||||||||||    
T  35669004 tttatggaaataagttgaaaacaatttatggacat 35669038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 35925720 - 35925758
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  35925720 agtttatggaaataagttgaaaacagcttatgaacatgt 35925758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 11695888 - 11695929
Alignment:
Q  210 gaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||| ||||| |||||||||||||||| |||||||||||||    
T  11695888 gaaagcttatgaaaataagttgaaaacagcttatggacatgt 11695929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 17420238 - 17420271
Alignment:
Q  218 atggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||||||||||||||| ||||||||||||    
T  17420238 atggaaataagttgaaaacaatttatggacatgt 17420271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 33527289 - 33527212
Alignment:
Q  122 agcataagcgcgtatgtataagctagtactgcaacaaatgataaaatagagtaaaactattttcataaattctataag 199  Q
    ||||||||||| |||| |||||||| | ||  |||||| ||||||||| ||| ||||| |||||||| | ||||||||    
T  33527289 agcataagcgcttatgaataagctatttctaaaacaaaagataaaatacagtcaaactgttttcatataatctataag 33527212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 2522661 - 2522697
Alignment:
Q  215 tttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  2522661 tttatggaaataagttgaaaacaaattacggacatgt 2522697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 4549533 - 4549473
Alignment:
Q  258 tttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||||||||| | |||||||||||| ||||||||||| |||  |||||  ||||||||    
T  4549533 tttctataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataa 4549473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 4768867 - 4768831
Alignment:
Q  215 tttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  4768867 tttatggaaataagctgaaaacaagttatggacatgt 4768831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 4868428 - 4868468
Alignment:
Q  211 aaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| ||||| |||||||||||||||||||||| |||||||    
T  4868428 aaagcttatgtaaataagttgaaaacaacttattgacatgt 4868468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 5157150 - 5157210
Alignment:
Q  258 tttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||||||||| | |||||||| |||||| || ||||||| |  |||||||||||||||    
T  5157150 tttctataagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataa 5157210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 6279419 - 6279467
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| |||| || ||||||||||| | ||||||||||||||||||||||    
T  6279419 tatcctagagagcttatggaaatacgctgaaaacaacttatggacatgt 6279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 23373305 - 23373245
Alignment:
Q  258 tttctataagctcccacaaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||||||||| | |||||| |||||||| ||||||| ||||  || ||||||||||||    
T  23373305 tttctataagctctcccaaacaatctcacaagtgcttatatcagtagacaagttcaaataa 23373245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 24460377 - 24460333
Alignment:
Q  274 caaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    ||||||||||||||| |||| |||||||  |||||||||||||||    
T  24460377 caaacagtctcacaagtgctcatgtcagtagataagttcaaataa 24460333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 25719464 - 25719528
Alignment:
Q  124 cataagcgcgtatgtataagctagtactgcaacaaatgataaaatagagtaaaactattttcata 188  Q
    |||||| ||||||| |||||||| | ||| || ||| ||| ||||| ||||||||||||||||||    
T  25719464 cataagtgcgtatgaataagctatttctgtaataaaagatgaaataaagtaaaactattttcata 25719528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 47917264 - 47917304
Alignment:
Q  211 aaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||  |||||||||||||||||||||||| ||||||    
T  47917264 aaagtttaaagaaataagttgaaaacaacttatgaacatgt 47917304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 29467674 - 29467626
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| |||| |||||||||||||||| |||||||| |||||||||||||    
T  29467674 tatcctagagagtttatggaaataagctgaaaacagcttatggacatgt 29467626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 7694050 - 7694012
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  7694050 agtttatggaaataagctgaaaacaacttatgaacatgt 7694012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 39438578 - 39438540
Alignment:
Q  213 agtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  39438578 agttaatgaaaataagttgaaaacaacttatggacatgt 39438540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 5131287 - 5131254
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacat 249  Q
    ||||||||||||| ||||||||||||||||||||    
T  5131287 ttatggaaataagctgaaaacaacttatggacat 5131254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 8074841 - 8074878
Alignment:
Q  258 tttctataagctcccacaaacagtctcacaaatgctta 295  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  8074841 tttctataagctctctcaaacagtctcacaaatgctta 8074878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 20656073 - 20656105
Alignment:
Q  219 tggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||||||||| |||||||||||||||||    
T  20656073 tggaaataagttgaagacaacttatggacatgt 20656105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 30770983 - 30771027
Alignment:
Q  274 caaacagtctcacaaatgcttatgtcagctgataagttcaaataa 318  Q
    |||||||||| |||||||||||||||||  ||||| |||||||||    
T  30770983 caaacagtcttacaaatgcttatgtcagtggataaattcaaataa 30771027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 43824310 - 43824350
Alignment:
Q  210 gaaagtttatggaaataagttgaaaacaacttatggacatg 250  Q
    ||||| ||||||||||||| ||||||||||||||| |||||    
T  43824310 gaaagcttatggaaataagctgaaaacaacttatgaacatg 43824350  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 55547086 - 55547046
Alignment:
Q  211 aaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    |||||||||||||||||| | |||||||||||| |||||||    
T  55547086 aaagtttatggaaataagctaaaaacaacttatagacatgt 55547046  T

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Target: scaffold0254 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 3506 - 3539
Alignment:
Q  216 ttatggaaataagttgaaaacaacttatggacat 249  Q
    ||||||||||||| ||||||||||||||||||||    
T  3506 ttatggaaataagctgaaaacaacttatggacat 3539  T

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Target: scaffold0147 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 12754 - 12706
Alignment:
Q  203 tatcttagaaagtttatggaaataagttgaaaacaacttatggacatgt 251  Q
    ||||||||| || |||||||  |||| ||||||||||||||||||||||    
T  12754 tatcttagagagcttatggagctaagctgaaaacaacttatggacatgt 12706  T

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