View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_high_13 (Length: 354)
Name: NF14943_high_13
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 6387272 - 6387608
Alignment:
| Q |
17 |
caacataaataaaaacaacaatatcgaaatagtaggtgcactgatgagaagtgagtatctcagatgcagcgctgagcctgctcctaaactcaccaatctt |
116 |
Q |
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| T |
6387272 |
caacataaataaaaacaacaatatcgaaatagtaggtgcactgatgagaagtgagtatctcagatgcagtgctgagcctgctcccaaactcaccaatctt |
6387371 |
T |
|
| Q |
117 |
cctcaagggaatatcagtatcctccagagaagattcaaattgtatttgcttctattatatctttccgatttcagagttcattgttgttgtaaattgtaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6387372 |
cctcaagggaatatcagtatcctccagagaagattcaaattgtatttgcttctattatatctttccgatttcagagttcattgttgttgtaaattgtaat |
6387471 |
T |
|
| Q |
217 |
aacctatgaaccactaacacaaacacagataccgatgctacaa-atcgttccatgctacgagttta-------catgtatcatacatcattgtgctcagt |
308 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6387472 |
aacctatgaaccactaacacaaacacagatatcgatgctacaacatcgttccatgctacgagtttacatgtatcatgtatcatacatcattgtgctcagt |
6387571 |
T |
|
| Q |
309 |
ttttggctgctgagccaccggacatgaccacctatgc |
345 |
Q |
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||||||||||||||| |||||| |||||||||||||| |
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| T |
6387572 |
ttttggctgctgagcaaccggatatgaccacctatgc |
6387608 |
T |
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