View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14943_high_15 (Length: 342)
Name: NF14943_high_15
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 7652350 - 7652075
Alignment:
| Q |
1 |
acattcttatttccatttttaccctctggcattccaccttgattctgactctgattatttccaccgtcgccaccaccacctttctttcctccattcccat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7652350 |
acattcttatttccatttttaccttctggcattccaccttgattctgaatctgattatttccaccttcgccaccaccacctttctttcctccattcccat |
7652251 |
T |
|
| Q |
101 |
ttccaccagccaaggaatgaacttgaacaggcataggtactccaccacttccgccaccaccttttatttcaatgcctccaccatttcctgcactgatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7652250 |
ttccaccagccaaggaatgaacttgaacaggcataggtcctccaacacttccgccaccaccttttatttcaatgcctccaccatttcctgcactgatctt |
7652151 |
T |
|
| Q |
201 |
ttgagcattcatcatcatgtgagcaggaccattactccccatagatagtttcattttattcaaaggattctctatt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7652150 |
ttgagcattcatcatcatgtgagcaggaccattactccccatagatagtttcattttattcaaagtattctctatt |
7652075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 7657560 - 7657490
Alignment:
| Q |
198 |
cttttgagcattcatcatcatgtgagcaggaccattactccccatagatagtttcattttattcaaaggat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| |
|
|
| T |
7657560 |
cttttgagcattcatcatcatgtgagcaggaccattaccccccataggtagtttcatcttattcaaaggat |
7657490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 7657695 - 7657639
Alignment:
| Q |
33 |
tccaccttgattctgactctgattatttccaccgtcgccaccaccacctttctttcc |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | |||||||||||||||||||| |
|
|
| T |
7657695 |
tccaccttgattctgactctgattatttccgccaccaccaccaccacctttctttcc |
7657639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 7657763 - 7657725
Alignment:
| Q |
1 |
acattcttatttccatttttaccctctggcattccacct |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7657763 |
acattcttatttccatttttaccctctggcattccacct |
7657725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 48572896 - 48572934
Alignment:
| Q |
70 |
ccaccaccacctttctttcctccattcccatttccacca |
108 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48572896 |
ccaccaccacctttctttcctccattgccatttccacca |
48572934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 48538558 - 48538612
Alignment:
| Q |
50 |
tctgattatttccaccgtcgccaccaccacctttctttcctccattcccatttcc |
104 |
Q |
| |
|
||||||||||||| || | ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
48538558 |
tctgattatttcctccaccaccaccgccacctttctttcctccattgccatttcc |
48538612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University