View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_high_16 (Length: 320)
Name: NF14943_high_16
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 32266987 - 32266852
Alignment:
| Q |
13 |
aaaatgaaatgatcaaattctgcaaagaatgtgggaaaggttttccttcattgaaagcactttgtggacacatggcttctcattctgagaaagagaaaaa |
112 |
Q |
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| T |
32266987 |
aaaatgaaatgatcaaattctgcaaagaatgtgggaaaggttttccttcattgaaagcactttgtggacacatggcttctcattctgagaaagagaaaaa |
32266888 |
T |
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| Q |
113 |
gatcaacaaggctatgatggaggaggatactcaatc |
148 |
Q |
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| T |
32266887 |
gatcaacaaggctatgatggaggaggatactcaatc |
32266852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 32266822 - 32266696
Alignment:
| Q |
175 |
tttgtgttgctgctacaacaatgaatctaaggaaatctaagagaagaattaggttcaagtctattactctttcaaatcatcaaccttcttcttcttctgt |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32266822 |
tttgtgttgctgctacaacaatgaatctaaggaaatctaagagaagaattaggttcaagtctattactctttcaaatcagcaaccttcttcttcttctgt |
32266723 |
T |
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| Q |
275 |
taatggcggttcttcatctgtttctga |
301 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
32266722 |
taatggtggttcttcatctgtttctga |
32266696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 19301476 - 19301397
Alignment:
| Q |
27 |
aaattctgcaaagaatgtgggaaaggttttccttcattgaaagcactttgtggacacatggcttctcattctgagaaaga |
106 |
Q |
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| T |
19301476 |
aaattctgcaaagaatgtggaaaaggttttccatcattgaaagcactgtgtggtcacatggcttgtcactctgagaaaga |
19301397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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