View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_high_18 (Length: 310)
Name: NF14943_high_18
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 33255932 - 33255650
Alignment:
| Q |
15 |
ggttaaggggaagaatgtagactcttgattatataataattcagtttagaattatgttagtcatcctacagacaagttcatagattgtgtaaattttgaa |
114 |
Q |
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| T |
33255932 |
ggttaaggggaagaatgtagactcttgattatataataattcagtttagaattatgttagtcatcctacagacaagttcatagattgtgtaaattttgaa |
33255833 |
T |
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| Q |
115 |
ctttgaagatattatctgttagtacatgtttgtgatttgtgttaattgtttaacaacttgtcaatat-----tttaactctaaattaaactgagtcgg-a |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |
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| T |
33255832 |
ctttgaagatattatctgttagtacatgtttgtgatttgtgttaattgtttaataacttgtcaatattttattttaactctaaattaaactgagtcggaa |
33255733 |
T |
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| Q |
209 |
ataaataaatcagtccnnnnnnnnnnnnnnnnncatgaaaacctattgattcctcgtaaacgaaaattgtgaattctctgtacataa |
295 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33255732 |
ataaataattcagtccaaaaaaaataaaaa----atgaaaacctattgattcctcgtaaacgaaaattgtgaattctctgtacataa |
33255650 |
T |
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