View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_high_2 (Length: 547)
Name: NF14943_high_2
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Original strand, 42188166 - 42188672
Alignment:
| Q |
18 |
caaactaggtattaagtggcaaaaggatgannnnnnnattcattgaaattgagaagacctaaggctttggtctagcggtaaaaagactagccttggactt |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42188166 |
caaactaggtattaagtggcaaaaggatgatttttttattcattgaaattgagaagacctaagggtttggtctagcggtaaaaagactagccttggactt |
42188265 |
T |
|
| Q |
118 |
ggaatttctgggtttaagctcgctagtgtcctttagagggaggtcaatgtgaatccttttgttagtactgtttgaggtttaagttcttcattgtcttgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42188266 |
ggaatttctgggtttaagctcgctagtgtcctttagagggaggtcaatgtgaatccttttgttagtactgtttgaggtttaagttcttcattgtcttgga |
42188365 |
T |
|
| Q |
218 |
ctggggtaccatcccctcgccgtaactttatttcatcaacaaaagtaattaatgatcatattgcgactgtctcatttttggatcattattttgatttcag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42188366 |
ctggggtaccatcccctcgccgtaactttatttcatcaacaaaagtaattaatgatcatattgcgactgtctcatttttggatcattattttgatttcag |
42188465 |
T |
|
| Q |
318 |
ataaattttgccatattgaaagaatcagatatccgggatcggcaggaagatgatatcagtagtgtcgcaacagttctttccataccaccagttgctgcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42188466 |
ataaattttgccatattgaaagaatcagatatccgggatcggcaggaagatgatatcagtagtgtcgcaacagttctttccataccaccagttgctgcaa |
42188565 |
T |
|
| Q |
418 |
gcatcctacttcgtcattacaattggtaaatccgttatctttttgggttacatgctatcttattttgtgtgttcatattttgatgctgccttgtatgtta |
517 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42188566 |
gcatcctacttcgtcattacaattggtaaatccgctatctttttgggttacatgctatcttattttgtgtgttcatattttgatgctgccttgtatgtta |
42188665 |
T |
|
| Q |
518 |
tgtgaag |
524 |
Q |
| |
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||||||| |
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| T |
42188666 |
tgtgaag |
42188672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 29537617 - 29537744
Alignment:
| Q |
316 |
agataaattttgccatattgaaagaatcagatatccgggatcggcaggaagatgatatcagtagtgtcgcaacagttctttccataccaccagttgctgc |
415 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| |
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| T |
29537617 |
agataaatttttccatattgaaagaatcagatatccgggaacggcaggaagatgatatcaggagtgtcgcagcagttctttccataccacctgttgctgc |
29537716 |
T |
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| Q |
416 |
aagcatcctacttcgtcattacaattgg |
443 |
Q |
| |
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| T |
29537717 |
aagcatcctacttcgtcattataattgg |
29537744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 29552747 - 29552874
Alignment:
| Q |
316 |
agataaattttgccatattgaaagaatcagatatccgggatcggcaggaagatgatatcagtagtgtcgcaacagttctttccataccaccagttgctgc |
415 |
Q |
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||||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
29552747 |
agataaatttttccatattgaacgaatcagatatccgggaacagcaggaagatgatattagtagtgtcgcggcagttctttccataccaccagttgctgc |
29552846 |
T |
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| Q |
416 |
aagcatcctacttcgtcattacaattgg |
443 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
29552847 |
aagcatcctacttcgtcattataattgg |
29552874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 448
Target Start/End: Original strand, 25206312 - 25206450
Alignment:
| Q |
310 |
gatttcagataaattttgccatattgaaagaatcagatatccgggatcggcaggaagatgatatcagtagtgtcgcaacagttctttccataccaccagt |
409 |
Q |
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|||||||| ||||||| |||||||||| ||||| |||||||| | | ||||||||||| || ||| || ||| | |||||||| || || ||| |
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| T |
25206312 |
gatttcagcaaaattttaccatattgaaggaatctgatatccgagtaagacaggaagatgacattgatagagttgcagctgttctttctgtatcaagagt |
25206411 |
T |
|
| Q |
410 |
tgctgcaagcatcctacttcgtcattacaattggtaaat |
448 |
Q |
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|||||||||||| ||||||||||| ||||||||||||| |
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| T |
25206412 |
tgctgcaagcatactacttcgtcaccacaattggtaaat |
25206450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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