View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_high_21 (Length: 298)
Name: NF14943_high_21
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_high_21 |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 34 - 298
Target Start/End: Complemental strand, 9976862 - 9976598
Alignment:
| Q |
34 |
gagaaattgttgaaattgagttagagaatagaaaacaagaaggcgcaatgtggtaaagaacaaatccatatcaaatatagtaaaattatttaaggtagaa |
133 |
Q |
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| T |
9976862 |
gagaaatcgttgaaattgagctagagaatagaaaacaagaaggtgcaatgtggtaaagaacaaatccatatcaaatatagtaaaattatttaaggtagaa |
9976763 |
T |
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| Q |
134 |
gatattaaattgtaacattcaatatgtagttttattttcttgtgtttttccgccaaattttatgcatgtaaatcatatcaattgtggtattaatattgca |
233 |
Q |
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| T |
9976762 |
gatattaaattttaacattcaatatgtagttttattttcttgtgtttttccgccaaattttatgcatgtaaatcctatcaattgtggtattaatattgca |
9976663 |
T |
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| Q |
234 |
aatatttacgagctagtgtatctatcacttcaacatgtgatttccacttcatttcttaattctcc |
298 |
Q |
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| T |
9976662 |
aatatttacgagctagtgtatctatcacttcaacatgtgatttccacttcatttcttaattctcc |
9976598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 9976597 - 9976537
Alignment:
| Q |
238 |
tttacgagctagtgtatctatcacttcaacatgtgatttccacttcatttcttaattctcc |
298 |
Q |
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| T |
9976597 |
tttacgagctagtgtatctatcacttcaacatgtgatttccacttcatttcataattctcc |
9976537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 46 - 298
Target Start/End: Original strand, 7112087 - 7112337
Alignment:
| Q |
46 |
aaattgagttagagaatagaaaacaagaaggcgcaatgtggtaaagaacaaatc--catatcaaatatagtaaaattatttaaggtagaagatattaaat |
143 |
Q |
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| T |
7112087 |
aaattgagttaaagaatagaaaacaagaagtcgcaacgtggtaaagaacaaatccacacattaaagatagtaaaattatataagttagaagatattaaat |
7112186 |
T |
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| Q |
144 |
tgtaacattcaatatgtagttttattttcttgtgtttttccgccaaattttatgcatgtaaatcatatcaattgtggtattaatattgcaaatatttacg |
243 |
Q |
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| T |
7112187 |
tttattattcaatatgtagtttacttttc-----attttcccccaacttttatgcatgaaaatcatatcaattgcagtattaatattgaaaatacttaca |
7112281 |
T |
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| Q |
244 |
agctagtg-tatctatcacttcaacatgtgatttccacttcatttcttaattctcc |
298 |
Q |
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| T |
7112282 |
ggctagtgatatctatgacttcagtatgtgattttcacttcatttcatgattctcc |
7112337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 5794597 - 5794511
Alignment:
| Q |
46 |
aaattgagttagagaatagaaaacaagaaggcg-caatgtggtaaagaacaaatccatatcaaatatagtaaaattatttaaggtag |
131 |
Q |
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| T |
5794597 |
aaattgagttaggaaatagaaaacaagaaggcgacaatgagataaagaacaaatctatctcaaagatagttaacttatataaggtag |
5794511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 5696128 - 5696039
Alignment:
| Q |
34 |
gagaaattgttgaaattgagttagagaatagaaaacaagaaggcg-caatgtggtaaagaacaaatccatatcaaatatagtaaaattat |
122 |
Q |
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| T |
5696128 |
gagaaatcattgaaattgaattagagaatattaaacaagaaggcgacaatgagataaagaacaaaccaatctcaaagataataaacttat |
5696039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 9430207 - 9430290
Alignment:
| Q |
43 |
ttgaaattgagttagagaatagaaaacaagaaggcgcaatgtggtaaagaacaaatccatatcaaatatagtaaaattatttaagg |
128 |
Q |
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||||||||| |||| |||||||||| ||||| | | |||| | |||||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
9430207 |
ttgaaattgggttaaagaatagaaagcaagatgtc--aatgagataaagaacaaatccatctcaaagatagtaaaattatataagg |
9430290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 9419064 - 9419147
Alignment:
| Q |
43 |
ttgaaattgagttagagaatagaaaacaagaaggcgcaatgtggtaaagaacaaatccatatcaaatatagtaaaattatttaagg |
128 |
Q |
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| T |
9419064 |
ttgaaattaggttagagaatagaaagcaagatgtc--aatgagataaaaaacaaatccatctcaaagatagtaaaattatataagg |
9419147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 18661167 - 18661101
Alignment:
| Q |
68 |
acaagaaggcgcaatgtggtaaagaacaaatccatatcaaatatagtaaaattatttaaggtagaagatat |
138 |
Q |
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| T |
18661167 |
acaagaaggtgcaatgaggtaaagaacaaatctatctcaa----agtaaaattatataaggtagaagatat |
18661101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 41484412 - 41484467
Alignment:
| Q |
54 |
ttagagaatagaaaacaagaaggcg-caatgtggtaaagaacaaatccatatcaaa |
108 |
Q |
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| T |
41484412 |
ttagagaatagaaaacaataatgcgtcaatgaggtaaagaacaaatccatctcaaa |
41484467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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