View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_high_33 (Length: 216)
Name: NF14943_high_33
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 2907364 - 2907185
Alignment:
| Q |
22 |
aagataaaatacatcattagaacagagtgaaatgagaattattagctcaaagggaaaatgtgtatttgttgcattcatttaaaaaatcatatcggctaaa |
121 |
Q |
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| T |
2907364 |
aagataaaatacatcattagaacaggatgaaatgagaattattagctcaaagggaaaatacgtatttgttgcattcatttaaaaaattatatcggctaaa |
2907265 |
T |
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| Q |
122 |
tatattatttgccaatgattatcctttgagacattgtcaataataattatcttttgtattaataatcttaggtaactatt |
201 |
Q |
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| T |
2907264 |
tatattatttgccaatgattatcctttgagacattgtcaataataattatcttttgtattaataatcttaggtaactatt |
2907185 |
T |
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Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 13505679 - 13505494
Alignment:
| Q |
17 |
gatgaaagataaaatacatcattagaacagagtgaaatgagaattattagctcaaagggaaaatgtgtatttgttgcattcatttaaaaaatcatatcgg |
116 |
Q |
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|||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
13505679 |
gatgaaagataaaatacatcattaaaaaagggtgaaatgagaattattagctcaaagggaaaataaatatttgttgcattcatttaaaaaatcatatctg |
13505580 |
T |
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| Q |
117 |
ctaaatatattatttgccaatgattatcctttgagacattgtcaa-taataattatcttttgtattaataatcttaggtaactatt |
201 |
Q |
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| T |
13505579 |
ctaaatatattatttgccaatgattatcctttgcgacattatcaattaataattatcttttgtattaataatcttaggtaactatt |
13505494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 40798548 - 40798606
Alignment:
| Q |
48 |
gtgaaatgagaattattagctcaaagggaaaatgtgtatttgttgcattcatttaaaaaa |
107 |
Q |
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| T |
40798548 |
gtgaaaagagaattattagctcaaa-gaaaaataggtatctgttgcattcatttaaaaaa |
40798606 |
T |
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