View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14943_high_34 (Length: 214)

Name: NF14943_high_34
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14943_high_34
NF14943_high_34
[»] chr3 (5 HSPs)
chr3 (35-167)||(9460587-9460719)
chr3 (47-167)||(29134422-29134541)
chr3 (35-104)||(43808767-43808836)
chr3 (35-115)||(19468804-19468884)
chr3 (35-93)||(50461046-50461104)
[»] chr1 (3 HSPs)
chr1 (47-167)||(51387009-51387128)
chr1 (29-104)||(22370294-22370369)
chr1 (29-96)||(38505951-38506018)
[»] chr6 (4 HSPs)
chr6 (36-167)||(18332473-18332595)
chr6 (44-142)||(21544814-21544912)
chr6 (28-104)||(34704048-34704124)
chr6 (30-104)||(12296193-12296264)
[»] chr4 (6 HSPs)
chr4 (35-100)||(13629553-13629618)
chr4 (28-86)||(47866606-47866664)
chr4 (30-91)||(19514443-19514504)
chr4 (30-91)||(37148424-37148485)
chr4 (47-104)||(16032725-16032782)
chr4 (44-92)||(16032236-16032284)
[»] chr2 (3 HSPs)
chr2 (30-104)||(41579249-41579323)
chr2 (35-113)||(28000674-28000752)
chr2 (73-142)||(39356711-39356780)
[»] chr7 (2 HSPs)
chr7 (31-113)||(39266831-39266913)
chr7 (35-142)||(48846848-48846955)
[»] chr5 (1 HSPs)
chr5 (30-91)||(24118434-24118495)


Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 9460587 - 9460719
Alignment:
Q  35 cttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaa-ttatctatcattaaatactaatgcatacaactctaaaatattt 133  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||  |||||||||||    
T  9460587 cttattctaaatgcttattaggtcatgcaaccattaaccctaatttttccctctaatttatctatcattaaatgctaa-gcatacaatcctaaaatattt 9460685  T
Q  134 ccctcctatgcaagttcaatttgaatttcaaatt 167  Q
    |||||||||| |||||||||||||||||||||||    
T  9460686 ccctcctatgaaagttcaatttgaatttcaaatt 9460719  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 29134422 - 29134541
Alignment:
Q  47 gcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaaatactaatgcatacaactctaaaatatttccctcctatgcaa 146  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||  |||||||||||||||| |||| |     
T  29134422 gcttattagatcatgcaaccattaaccctaatttttccctctaattatctatcattaaatgctaa-gcatacaatcctaaaatatttccctcgtatgaac 29134520  T
Q  147 gttcaatttgaatttcaaatt 167  Q
    || ||||||||||||||||||    
T  29134521 gtacaatttgaatttcaaatt 29134541  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 43808836 - 43808767
Alignment:
Q  35 cttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaa 104  Q
    |||| |||||| |||||||||||||||| | |||||||||||||||||||||||||| | || |||||||    
T  43808836 cttactctaaatgcttattaggtcatgctatcattaaccctaatttttccctctaataagctgtcattaa 43808767  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 19468804 - 19468884
Alignment:
Q  35 cttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaaatactaatgca 115  Q
    |||| |||||| |||||||||||| ||||| || ||| ||||||||||||||||| | |||| ||||||| | ||||||||    
T  19468804 cttactctaaatgcttattaggtcttgcaagcactaaacctaatttttccctctactaatctgtcattaattgctaatgca 19468884  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 50461046 - 50461104
Alignment:
Q  35 cttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaatta 93  Q
    |||| |||||| ||||||||||||  ||||||||| | |||||||||||||||||||||    
T  50461046 cttactctaaatgcttattaggtctagcaaccatttaacctaatttttccctctaatta 50461104  T

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Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 51387128 - 51387009
Alignment:
Q  47 gcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaaatactaatgcatacaactctaaaatatttccctcctatgcaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||  ||||||||||||||||||||| ||    
T  51387128 gcttattaggtcatgcaaccattaaccctaatttttccctctaattatctaacattaaatgctaa-gcatacaatcctaaaatatttccctcctatgaaa 51387030  T
Q  147 gttcaatttgaatttcaaatt 167  Q
    ||||||||| |||||||||||    
T  51387029 gttcaatttaaatttcaaatt 51387009  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 22370294 - 22370369
Alignment:
Q  29 atatctcttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaa 104  Q
    ||||| |||| |||||| |||||||||||||| | | |||||||||||||||||||||||||| | || |||||||    
T  22370294 atatcccttactctaaatgcttattaggtcatactatcattaaccctaatttttccctctaataagctgtcattaa 22370369  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 38505951 - 38506018
Alignment:
Q  29 atatctcttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatct 96  Q
    ||||| ||||||||||| |||||||||||||||| |||| | | ||||| ||||||||||||| ||||    
T  38505951 atatcccttattctaaatgcttattaggtcatgctaccacttaacctaaattttccctctaataatct 38506018  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 18332595 - 18332473
Alignment:
Q  36 ttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaaatactaatgcatacaactctaaaatatttcc 135  Q
    |||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||         |||||| | |||     
T  18332595 ttattctaaatgcttattaaatcatgcaaccattaaccctaatttttccctctaattatctatcattaaatgctaatg---------ctaaaaaaattcg 18332505  T
Q  136 ctcctatgcaagttcaatttgaatttcaaatt 167  Q
    |||||||||||||||||||||||||| |||||    
T  18332504 ctcctatgcaagttcaatttgaatttaaaatt 18332473  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 21544912 - 21544814
Alignment:
Q  44 aaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaaatactaatgcatacaactctaaaatatttccctcctat 142  Q
    |||| |||||||||| |||||||  ||| ||||||||||||||||||| |||| ||||||||| ||||| |||||||| |||||| |||||||||||||    
T  21544912 aaagtttattaggtcttgcaacctctaaacctaatttttccctctaataatctgtcattaaatgctaatccatacaaccctaaaaaatttccctcctat 21544814  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 34704048 - 34704124
Alignment:
Q  28 aatatctcttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaa 104  Q
    |||||| ||||||||||| |||||||||||| ||| || | ||| ||||||||||||||||||||||||| ||||||    
T  34704048 aatatcccttattctaaatgcttattaggtcttgctactactaaacctaatttttccctctaattatctagcattaa 34704124  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 12296193 - 12296264
Alignment:
Q  30 tatctcttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaa 104  Q
    |||| |||||| ||||||||||||||||| ||| ||   ||| ||||||||||||||||||| ||| ||||||||    
T  12296193 tatcccttattttaaaagcttattaggtcttgctac---taaacctaatttttccctctaatcatccatcattaa 12296264  T

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Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 13629553 - 13629618
Alignment:
Q  35 cttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatca 100  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13629553 cttattctaaatgcttatcaggtcatgcaaccattaaccctaatttttccctctaattatctatca 13629618  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 47866664 - 47866606
Alignment:
Q  28 aatatctcttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccct 86  Q
    |||||||||||||||||| |||||||||||| ||||| || ||| ||||||||||||||    
T  47866664 aatatctcttattctaaatgcttattaggtcttgcaagcactaaacctaatttttccct 47866606  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 19514443 - 19514504
Alignment:
Q  30 tatctcttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaat 91  Q
    |||| |||||||||||||||||| ||||| ||||||| || | |||||||||||||||||||    
T  19514443 tatcacttattctaaaagcttataaggtcttgcaaccttttaacctaatttttccctctaat 19514504  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 37148485 - 37148424
Alignment:
Q  30 tatctcttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaat 91  Q
    |||| |||| || ||| |||||||||||||||| | ||||||||||||||||| ||||||||    
T  37148485 tatcccttactccaaatgcttattaggtcatgctatcattaaccctaattttttcctctaat 37148424  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 16032725 - 16032782
Alignment:
Q  47 gcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaa 104  Q
    |||||||||||||||| |||| ||| |||||| |||||| | ||||||||| ||||||    
T  16032725 gcttattaggtcatgctaccactaaacctaatatttcccgcaaattatctagcattaa 16032782  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 16032284 - 16032236
Alignment:
Q  44 aaagcttattaggtcatgcaaccattaaccctaatttttccctctaatt 92  Q
    ||||||||||||||| ||||||  |||| ||||| ||||||||||||||    
T  16032284 aaagcttattaggtcttgcaacacttaaacctaaattttccctctaatt 16032236  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 41579249 - 41579323
Alignment:
Q  30 tatctcttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaa 104  Q
    |||| |||| |||||| |||||||||||||||| | |||||||||||||||||||||||||| | || |||||||    
T  41579249 tatcccttactctaaatgcttattaggtcatgctatcattaaccctaatttttccctctaataacctgtcattaa 41579323  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 28000674 - 28000752
Alignment:
Q  35 cttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaaatactaatg 113  Q
    ||||||||||| |||| ||||||||||| | |||||||||||||||||||||| ||| | || ||||||| | ||||||    
T  28000674 cttattctaaatgcttgttaggtcatgctatcattaaccctaatttttccctcaaataacctttcattaattgctaatg 28000752  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 39356711 - 39356780
Alignment:
Q  73 cctaatttttccctctaattatctatcattaaatactaatgcatacaactctaaaatatttccctcctat 142  Q
    ||||||||||||||||||| |||| ||||||| | ||||| || | ||| |||| |||||||||||||||    
T  39356711 cctaatttttccctctaataatctgtcattaattgctaatccacataaccctaatatatttccctcctat 39356780  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 39266913 - 39266831
Alignment:
Q  31 atctcttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaaatactaatg 113  Q
    ||||||||||||||| |||||||||||| ||| | |||| | ||||||||||||||||||| |||  ||||||| | ||||||    
T  39266913 atctcttattctaaatgcttattaggtcttgctatcatttaacctaatttttccctctaataatccttcattaattgctaatg 39266831  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 48846955 - 48846848
Alignment:
Q  35 cttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaattatctatcattaaatactaatgcatacaactctaaaatatttc 134  Q
    ||||||||||| |||||||||||| ||| |   || | ||||||||||||||| | | || | ||||||||| |||||| | ||||| ||  ||||||||    
T  48846955 cttattctaaatgcttattaggtcttgctatagtttaacctaatttttccctccactaatatgtcattaaatgctaatggaaacaaccctccaatatttc 48846856  T
Q  135 cctcctat 142  Q
    ||||||||    
T  48846855 cctcctat 48846848  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 24118434 - 24118495
Alignment:
Q  30 tatctcttattctaaaagcttattaggtcatgcaaccattaaccctaatttttccctctaat 91  Q
    |||| |||| ||| ||||||||| ||||| ||||||| || | |||||||||||||||||||    
T  24118434 tatcacttactctgaaagcttataaggtcttgcaaccttttaacctaatttttccctctaat 24118495  T

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