View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_high_35 (Length: 212)
Name: NF14943_high_35
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 46863830 - 46864010
Alignment:
| Q |
19 |
gagaaattgggaggaagatcaaaaattcattcacaagatgaagctatgcaggatgtattccaatggtgagaaatgtttctttggtagtaagtgtaatttt |
118 |
Q |
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| T |
46863830 |
gagaaattgggaggaagatcaaaaattcattcacaagatgaagctatgcaggatgtattccaatggtgagaaatgtttctttggtagtaagtgtaatttt |
46863929 |
T |
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| Q |
119 |
cgtcatgaggatcctgctaagtctagggatcattcttggaagtcaggagagtgttcttctataagcattgggactattggt |
199 |
Q |
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| T |
46863930 |
cgtcatgaggatcctgctaagtctagggatcattcttggaagtcaggagagtgttcttctataagcattgggactattggt |
46864010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 46898949 - 46899126
Alignment:
| Q |
22 |
aaattgggaggaagatcaaaaattcattcacaagatgaagctatgcaggatgtattccaatggtgagaaatgtttctttggtagtaagtgtaattttcgt |
121 |
Q |
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| T |
46898949 |
aaattgggatgaagatcaaaaaatcattcacaagatgaagctgtgtaagaagtattacattggtgaggaatgtccttatggtgataagtgtagctttctt |
46899048 |
T |
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| Q |
122 |
catgaggatcctgctaagtctagggatcattcttggaagtcaggagagtgttcttctataagcattgggactattggt |
199 |
Q |
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| T |
46899049 |
catgaggatcctgctaggtttagggatgcttcttggaaaacaagagagtgttctgcaataagcgttggaaatattggt |
46899126 |
T |
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