View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14943_low_1 (Length: 610)
Name: NF14943_low_1
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 6 - 395
Target Start/End: Original strand, 34927520 - 34927909
Alignment:
| Q |
6 |
acataggtattgccaatttgccacatatatttaggcttacccaactgtgtcttgccttgggctaattggaactacacctgctctactagtgagacctact |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34927520 |
acataggtattgccaatttgccacatatatttaggcttacccaactgtgtcttgccttgggctaattggaactacacctgctctactagtgagacctact |
34927619 |
T |
|
| Q |
106 |
gttggtttgatgcctactactgagttcatacatgaagggcataaaatggagccatcagtttcagtaccaagtgacacagccaccaaatttgctgctactg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34927620 |
gttggtttgatgcctactactgagttcatacatgaagggcataaaatggagccatcagtttcagtaccaagtgacacagccaccaaatttgctgctactg |
34927719 |
T |
|
| Q |
206 |
atattgctggtccactacttgagccacaaggatcatccaacgtgtatggattctgcacaaaacaatgcacaagtgtgaactcattttctagaatcattcg |
305 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34927720 |
atattgctggcccactacttgagccacaaggatcatccaacgtgtatggattctgcacaaaacaatgcacaagtgtgaactcattttctagaatcattca |
34927819 |
T |
|
| Q |
306 |
tacttaagtgcctatgagaaggcataatgaagttattaatttaggcctccaaaaatattcactcacnnnnnnnagttggaagccacgtaa |
395 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
34927820 |
tacttaagttcctatgagaaggcataatgaagttattactttaggcctccaaaaatattcactcactttttttagttggaagccacgtaa |
34927909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 396 - 601
Target Start/End: Original strand, 34928702 - 34928907
Alignment:
| Q |
396 |
ttaggacctttggcaccccatttgctacacataatatttccactagcttcagtccattagactgataatgagactaatctctgcttaggtgttttcggtc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34928702 |
ttaggacctttggcaccccatttgctacacataatatttccactagcttcagtccattagactgataatgagactaatctctgcttaggtgttttcggtc |
34928801 |
T |
|
| Q |
496 |
ttagcttaaaactcgtcaccatgaatgtgtttagtagagatcgaactgcaaagtttcccgacaagctcagtagtggttaacaaactgaacctcaccaatt |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34928802 |
ttagcttaaaactcgtcaccatgaatgtgtttagtagagatcgaactgcaaagttccccgacaagctcagtagtggttaacaaactgaacctcaccaatt |
34928901 |
T |
|
| Q |
596 |
gagtat |
601 |
Q |
| |
|
|||||| |
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|
| T |
34928902 |
gagtat |
34928907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 8 - 543
Target Start/End: Original strand, 34932443 - 34932969
Alignment:
| Q |
8 |
ataggtattgccaatttgccaca------tatatttaggcttacccaactgtgtcttgccttgggctaattggaactacacctgctctactagtgagacc |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || || |
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|
| T |
34932443 |
ataggtattgccaatttgccacacacgtatatatacaggcttacccaactgtatcctgccttgggctaattggaactacacctgctctactagttaggcc |
34932542 |
T |
|
| Q |
102 |
tactgttggtttgatgcctactactgagttcatacatgaagggcataaaatggagccatcagtttcagtaccaagtgacacagccaccaaatttgctgct |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| |
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|
| T |
34932543 |
aactgttggtttgatgcctactactgagttaaaacctgaagggcataaaatggagccatccgtttcagtaccaagtgacacagttaccatatttgctgct |
34932642 |
T |
|
| Q |
202 |
actgatattgctggtccactacttgagccacaaggatcatccaacgtgtatggattctgcacaaaacaatgcacaagtgtgaa---ctcattttctagaa |
298 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||| || | | |||| ||||||||||||||||||| || ||||||||||||| |||||||||||||| |
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|
| T |
34932643 |
actgatattgctgatccactgcttgatccacagggtttacccaatgtgtatggattctgcacaacggaa-gcacaagtgtgaattcctcattttctagaa |
34932741 |
T |
|
| Q |
299 |
t---cattcgtacttaagtgcctatgagaaggcataatgaagttattaatttaggcctccaaaaatattcactcac-nnnnnnnagttggaagccacgta |
394 |
Q |
| |
|
| ||||| |||| |||| |||||| |||||||||||||| ||| ||||||||| |||||||||| || | |||||| |||| ||| |
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|
| T |
34932742 |
tcaccattcatactaaagttcctatgggaaggcataatgaaaccattcctttaggccttcaaaaatattttcttgcttttttttggttggaggccatgta |
34932841 |
T |
|
| Q |
395 |
attaggacctttggcaccccatttgctacacataatatttccactagcttcagtccattagactgataatgagactaatctctgcttaggtgttttcggt |
494 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||| |||||||||| | | |
|
|
| T |
34932842 |
attaggacctttggcaccccaaaagctacacataatat--------gc-------------actgataatgagactaatctctgcataggtgttttagat |
34932920 |
T |
|
| Q |
495 |
cttagcttaaaactcgtcaccatgaatgtgtttagtagagatcgaactg |
543 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| || | |||||||||| |
|
|
| T |
34932921 |
cttagcttaaaactcttcaccatggatgtgttttgtggggatcgaactg |
34932969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 37 - 270
Target Start/End: Original strand, 34898241 - 34898474
Alignment:
| Q |
37 |
taggcttacccaactgtgtcttgccttgggctaattggaactacacctgctctactagtgagacctactgttggtttgatgcctactactgagttcatac |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
34898241 |
taggcttacccaactgtgtcttgccttgggctaactggaactacacctgctctactagtgagaccaactgttggtttgatgcctactactgaattcatat |
34898340 |
T |
|
| Q |
137 |
atgaagggcataaaatggagccatcagtttcagtaccaagtgacacagccaccaaatttgctgctactgatattgctggtccactacttgagccacaagg |
236 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||| |||||||||||| ||||| || |
|
|
| T |
34898341 |
ttgaagggcataaaatggagccatcggtttcagtaccaagtgacagagtcaccaaatttgcagctactgatattgctgatccactacttgatccacaggg |
34898440 |
T |
|
| Q |
237 |
atcatccaacgtgtatggattctgcacaaaacaa |
270 |
Q |
| |
|
||| |||| ||||||||||||||||||| |||| |
|
|
| T |
34898441 |
ttcacccaatgtgtatggattctgcacaacacaa |
34898474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 38 - 281
Target Start/End: Original strand, 34921649 - 34921892
Alignment:
| Q |
38 |
aggcttacccaactgtgtcttgccttgggctaattggaactacacctgctctactagtgagacctactgttggtttgatgcctactactgagttcataca |
137 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| || |||||||| | || |
|
|
| T |
34921649 |
aggcttacccgactgtgtcttgccttgggctaattggaattacacctgctctactagtgataccaactgttggtttgatgcccaccactgagttaagacc |
34921748 |
T |
|
| Q |
138 |
tgaagggcataaaatggagccatcagtttcagtaccaagtgacacagccaccaaatttgctgctactgatattgctggtccactacttgagccacaagga |
237 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||| ||| |
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|
| T |
34921749 |
tgaagggcataagatggagccatcagtttcggtaccaagtgacacagtcaccaaatttgcagctactgatattgctgatccactacttgatccacaggga |
34921848 |
T |
|
| Q |
238 |
tcatccaacgtgtatggattctgcacaaaacaatgcacaagtgt |
281 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
34921849 |
tcatccaatgtgtatggattctgcacaacacaaagcacatgtgt |
34921892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 40 - 314
Target Start/End: Original strand, 34911845 - 34912122
Alignment:
| Q |
40 |
gcttacccaactgtgtcttgccttgggctaattggaactacacctgctctactagtgagacctactgttggtttgatgcctactactgagttcatacatg |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| || || ||||| | | || |
|
|
| T |
34911845 |
gcttacccaactgtgtcttgccttgggctaattggaactacacctgctctactagtgagaccaactgttggtttaaggcccaccacagagttaaggcctg |
34911944 |
T |
|
| Q |
140 |
aagggcataaaatggagccatcagtttcagtaccaagtgacacagccaccaaatttgctgctactgatattgctggtccactacttgagccacaaggatc |
239 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||| | |||||||||||| ||||||||||| |
|
|
| T |
34911945 |
aagggcataaaatggagccatcggtttcagtaccaagtgacacagtaaccagatttgctgctactgatattgccgatccactacttgaaccacaaggatc |
34912044 |
T |
|
| Q |
240 |
atccaacgtgtatggattctgcacaaaacaatgcacaagtgtgaa---ctcattttctagaatcattcgtacttaagt |
314 |
Q |
| |
|
|||||| ||||||||||||||||||| | || ||||| || |||| ||||||||| |||||||||| |||| |||| |
|
|
| T |
34912045 |
atccaatgtgtatggattctgcacaacaaaaagcacatgtttgaactcctcattttcaagaatcattcatactaaagt |
34912122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 384 - 487
Target Start/End: Complemental strand, 5713221 - 5713118
Alignment:
| Q |
384 |
gaagccacgtaattaggacctttggcaccccatttgctacacataatatttccactagcttcagtccattagactgataatgagactaatctctgcttag |
483 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||||||||| | |||||||||||||||||| || ||||||||| |||||||||||||| ||| |
|
|
| T |
5713221 |
gaaggcacgtaattaggacctttgacaccccattggctacacatagtctttccactagcttcagtcttttggactgataactagactaatctctgcctag |
5713122 |
T |
|
| Q |
484 |
gtgt |
487 |
Q |
| |
|
|||| |
|
|
| T |
5713121 |
gtgt |
5713118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 333 - 487
Target Start/End: Original strand, 2882111 - 2882267
Alignment:
| Q |
333 |
tgaagttattaatttaggcctccaaaaatattcactcacnnnnnnnag--ttggaagccacgtaattaggacctttggcaccccatttgctacacataat |
430 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
2882111 |
tgaagttattactttaggcctccaaaaatattcactcactttttttttgttttgaaggcacgtaattaggacctttggcaccccattggctacacatagt |
2882210 |
T |
|
| Q |
431 |
atttccactagcttcagtccattagactgataatgagactaatctctgcttaggtgt |
487 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |||||||||||||| ||||||| |
|
|
| T |
2882211 |
ctttccactagcttcagtcttttggactgataactagactaatctctgcctaggtgt |
2882267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 333 - 487
Target Start/End: Complemental strand, 16189937 - 16189781
Alignment:
| Q |
333 |
tgaagttattaatttaggcctccaaaaatattcactcacnnnnnnnag--ttggaagccacgtaattaggacctttggcaccccatttgctacacataat |
430 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
16189937 |
tgaagttattactttaggcctccaaaaatattcactcactttttttttgttttgaaggcacgtaattaggacctttggcaccccattggctacacatagt |
16189838 |
T |
|
| Q |
431 |
atttccactagcttcagtccattagactgataatgagactaatctctgcttaggtgt |
487 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |||||||||||||| ||||||| |
|
|
| T |
16189837 |
ctttccactagcttcagtcttttggactgataactagactaatctctgcctaggtgt |
16189781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 276 - 371
Target Start/End: Complemental strand, 40291862 - 40291764
Alignment:
| Q |
276 |
aagtgtgaactcattttctagaatc-attcgtacttaagtgcctatgagaaggcataa--tgaagttattaatttaggcctccaaaaatattcactcac |
371 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| |||||||||| | ||| || |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40291862 |
aagtgtgaactcattttctagaatccattcatacttaagttcctatgagaaagtatatgctgtagttattactttaggcctccaaaaatattcactcac |
40291764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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