View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14943_low_12 (Length: 375)

Name: NF14943_low_12
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14943_low_12
NF14943_low_12
[»] chr1 (16 HSPs)
chr1 (5-133)||(8408950-8409082)
chr1 (147-287)||(50754751-50754891)
chr1 (147-289)||(28739302-28739444)
chr1 (147-287)||(9379845-9379985)
chr1 (147-288)||(9884868-9885009)
chr1 (211-288)||(28045410-28045487)
chr1 (147-287)||(6539546-6539690)
chr1 (148-287)||(15928073-15928204)
chr1 (304-358)||(8409395-8409449)
chr1 (215-288)||(44381907-44381981)
chr1 (220-287)||(35251165-35251234)
chr1 (220-283)||(49200058-49200122)
chr1 (243-280)||(6539683-6539720)
chr1 (251-288)||(10449446-10449483)
chr1 (258-288)||(34026751-34026781)
chr1 (243-287)||(47557385-47557429)
[»] chr7 (6 HSPs)
chr7 (147-285)||(17272726-17272864)
chr7 (149-229)||(7211947-7212027)
chr7 (224-287)||(43500085-43500148)
chr7 (147-287)||(29681792-29681940)
chr7 (147-199)||(7211887-7211939)
chr7 (148-200)||(35418201-35418253)
[»] chr2 (6 HSPs)
chr2 (147-287)||(39819090-39819230)
chr2 (147-287)||(12918560-12918700)
chr2 (148-287)||(15562232-15562371)
chr2 (147-290)||(7755363-7755497)
chr2 (243-287)||(12918498-12918543)
chr2 (243-280)||(39819060-39819097)
[»] chr3 (10 HSPs)
chr3 (147-293)||(11512414-11512560)
chr3 (147-288)||(22893890-22894030)
chr3 (147-253)||(31342034-31342140)
chr3 (148-253)||(20286932-20287037)
chr3 (222-278)||(29081598-29081655)
chr3 (243-280)||(49159502-49159539)
chr3 (303-350)||(1150590-1150638)
chr3 (251-283)||(5633181-5633213)
chr3 (243-287)||(25790897-25790941)
chr3 (249-291)||(48342782-48342824)
[»] chr8 (4 HSPs)
chr8 (136-291)||(43465102-43465260)
chr8 (242-289)||(16687510-16687557)
chr8 (147-287)||(31470771-31470913)
chr8 (243-287)||(1605038-1605082)
[»] chr4 (13 HSPs)
chr4 (147-287)||(31846782-31846922)
chr4 (147-287)||(31012154-31012294)
chr4 (131-253)||(6607420-6607542)
chr4 (210-271)||(6608439-6608500)
chr4 (210-286)||(2254622-2254698)
chr4 (214-280)||(46321429-46321496)
chr4 (220-285)||(32008336-32008402)
chr4 (229-280)||(31012124-31012176)
chr4 (231-285)||(15031965-15032020)
chr4 (247-280)||(31846919-31846952)
chr4 (243-280)||(33380737-33380774)
chr4 (251-287)||(36273080-36273116)
chr4 (229-280)||(54613030-54613082)
[»] chr6 (7 HSPs)
chr6 (147-288)||(2543734-2543874)
chr6 (210-287)||(11448147-11448224)
chr6 (249-287)||(16193850-16193888)
chr6 (243-288)||(23917051-23917096)
chr6 (250-287)||(28581731-28581768)
chr6 (251-287)||(369542-369578)
chr6 (243-287)||(5150619-5150663)
[»] chr5 (13 HSPs)
chr5 (148-287)||(5215560-5215700)
chr5 (147-271)||(19417472-19417595)
chr5 (147-260)||(9177863-9177976)
chr5 (147-260)||(29385303-29385416)
chr5 (170-287)||(36568755-36568871)
chr5 (148-202)||(1839999-1840053)
chr5 (221-281)||(7137637-7137698)
chr5 (243-280)||(19417442-19417479)
chr5 (243-280)||(29385409-29385446)
chr5 (250-287)||(41288004-41288041)
chr5 (211-259)||(25879328-25879376)
chr5 (147-200)||(23219360-23219413)
chr5 (251-287)||(896268-896304)
[»] scaffold0343 (1 HSPs)
scaffold0343 (243-287)||(12226-12270)
[»] scaffold0110 (1 HSPs)
scaffold0110 (251-287)||(26631-26667)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 8408950 - 8409082
Alignment:
Q  5 ttactaatagatactaagaaaagcagtattccaaaattccaaatcgtatttttactat----cacacaaaaagtatgcgtaattttttgcgatacatagc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    ||||||||||||||| ||||||||||||||||||||||    
T  8408950 ttactaatagatactaagaaaagaagtattccaaaattccaaatcgtatttttactatctatcacacaaaaagtatgtgtaattttttgcgatacatagc 8409049  T
Q  101 aaaagtgctattacaattttctaacaaaatttc 133  Q
    |||||||||||||||||||||||||||||||||    
T  8409050 aaaagtgctattacaattttctaacaaaatttc 8409082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 147 - 287
Target Start/End: Original strand, 50754751 - 50754891
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||||| |||||||||  |||||||| ||||||||||||||||| ||||||       ||||||||||||||||||||||||||| ||| |||||    
T  50754751 gtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagatttttttgttgttttgcacacttgtaacattgtggttgataatg 50754850  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  50754851 tcaccaatgtcaccaaccacaatgtcacccaagtattatcc 50754891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 147 - 289
Target Start/End: Complemental strand, 28739444 - 28739302
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||||| |||||||||  |||||||| |||| |||||||||||| ||||||       ||| ||||||||||||||||||||||| |||||||||    
T  28739444 gtgacattggccaaccacaatgtcacatgtggcttttttctttttcttttacaagatttttttgttattttgcacacttgtaacattgtggttggtaatg 28739345  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatccca 289  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  28739344 tcaccaatatcaccaaccacaatatcacccaagtattatccca 28739302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 147 - 287
Target Start/End: Original strand, 9379845 - 9379985
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    |||| |||||| |||||||||  |||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||    
T  9379845 gtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggtaatg 9379944  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    | |||||| ||||||||||||||||||||||| ||||||||    
T  9379945 ttaccaatgtcaccaaccacaatgtcacccaaatattatcc 9379985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 147 - 288
Target Start/End: Original strand, 9884868 - 9885009
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||||  |||||||||  |||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||| |||||    
T  9884868 gtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttgataatg 9884967  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatccc 288  Q
    |||| ||| |||||||||||||| |||||||||||| |||||    
T  9884968 tcacgaatgtcaccaaccacaatatcacccaagtatcatccc 9885009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 28045410 - 28045487
Alignment:
Q  211 ttgttttgcacacttgtaacattgtgtttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatccc 288  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28045410 ttgttttgtacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 28045487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 147 - 287
Target Start/End: Complemental strand, 6539690 - 6539546
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggta--- 243  Q
    ||||||||||  |||||||||  |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||||||       
T  6539690 gtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaagacttttttgttgttttgcacacttgtaacattgtggttggtaaca 6539591  T
Q  244 --atgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
      || |||||||| | ||||||||||||||||  ||||||||||||    
T  6539590 tcatatcaccaatgttaccaaccacaatgtca-gcaagtattatcc 6539546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 148 - 287
Target Start/End: Complemental strand, 15928204 - 15928073
Alignment:
Q  148 tgacattggctaaccacaataacacatgtgactttcttctttttctttcacaaga-nnnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    |||||||||| |||||||||  |||||||| ||||||||||||||||||||||||        ||||||||| ||||||||||||||||| ||| |||||    
T  15928204 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttgttgttgttttgtacacttgtaacattgtggttgataatg 15928105  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    ||||||||         ||||||||||||||||||||||||    
T  15928104 tcaccaat---------cacaatgtcacccaagtattatcc 15928073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 358
Target Start/End: Original strand, 8409395 - 8409449
Alignment:
Q  304 cattgattcatcatcatcgatagtttaatttaaagttaaaagtttgaacaacaaa 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8409395 cattgattcatcatcatcgatagtttaatttaaagttaaaagtttgaccaacaaa 8409449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 44381981 - 44381907
Alignment:
Q  215 tttgcacacttgtaacattgtgtttggt-aatgtcaccaatatcaccaaccacaatgtcacccaagtattatccc 288  Q
    |||| |||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  44381981 tttgtacacgtgtaacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcacccaaatattatccc 44381907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 35251234 - 35251165
Alignment:
Q  220 acacttgtaacattgtgtttggtaatgtcaccaatatcaccaaccaca--atgtcacccaagtattatcc 287  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |  |||||| |||||||||||||    
T  35251234 acacttgtaacattgtggttggtaatgtcaccaatatcaccaaccatatcatgtcatccaagtattatcc 35251165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 49200058 - 49200122
Alignment:
Q  220 acacttgtaacattgtgtttggt-aatgtcaccaatatcaccaaccacaatgtcacccaagtatt 283  Q
    |||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  49200058 acacttgtgacattgtggttggtcaatgtcatcaatatcaccaaccacaatgtcacctaagtatt 49200122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 6539683 - 6539720
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcacccaagt 280  Q
    |||||||||||||||| |||||||||||||||||||||    
T  6539683 aatgtcaccaatatcatcaaccacaatgtcacccaagt 6539720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 10449483 - 10449446
Alignment:
Q  251 caatatcaccaaccacaatgtcacccaagtattatccc 288  Q
    |||| |||||||||||||||||||||||||||||||||    
T  10449483 caatgtcaccaaccacaatgtcacccaagtattatccc 10449446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Complemental strand, 34026781 - 34026751
Alignment:
Q  258 accaaccacaatgtcacccaagtattatccc 288  Q
    |||||||||||||||||||||||||||||||    
T  34026781 accaaccacaatgtcacccaagtattatccc 34026751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 47557385 - 47557429
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||||||||||| ||||||||| |||| ||||| |||||||||||    
T  47557385 aatgtcaccaatgtcaccaaccgcaatttcacctaagtattatcc 47557429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 147 - 285
Target Start/End: Original strand, 17272726 - 17272864
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||    
T  17272726 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggtaatg 17272825  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattat 285  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  17272826 tcaccaatgtcaccaaccacaatgtcacccaagtattat 17272864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 7212027 - 7211947
Alignment:
Q  149 gacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaa 229  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  7212027 gacattggccaaccacaatgtcacatgtgactttcttctttttctttcacaagatttttttgttgttttgcacacttgtaa 7211947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 43500085 - 43500148
Alignment:
Q  224 ttgtaacattgtgtttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||    
T  43500085 ttgtaacattgtggttggtaatgtcaccaatatcaccaaccacaatatcgcccaaatattatcc 43500148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 287
Target Start/End: Original strand, 29681792 - 29681940
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggt---- 242  Q
    ||||||||||| ||||||||   |||||||| |||| || ||||| ||| ||||||       |||||||| |||||||||||||||||| |||||        
T  29681792 gtgacattggccaaccacaacgtcacatgtggctttttttttttttttt-acaagatatttttgttgttttacacacttgtaacattgtggttggtaatg 29681890  T
Q  243 -----aatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
         |||||||||||| ||||||||||||||||||||||||||||||||    
T  29681891 tcaccaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 29681940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 7211887 - 7211939
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcaca 199  Q
    ||||||||||| |||||||||  |||||||| |||||||||||||||||||||    
T  7211887 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 7211939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 35418201 - 35418253
Alignment:
Q  148 tgacattggctaaccacaataacacatgtgactttcttctttttctttcacaa 200  Q
    |||||||||  |||||||||| ||||||||||||||| |||||||||| ||||    
T  35418201 tgacattggtcaaccacaatatcacatgtgactttctcctttttcttttacaa 35418253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 147 - 287
Target Start/End: Original strand, 39819090 - 39819230
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||       |||||||||||||||||||| |||||| |||||||||    
T  39819090 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaatattgtggttggtaatg 39819189  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  39819190 tcaccaatgtcaccaaccacaatgtcacccaagtattatcc 39819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 147 - 287
Target Start/End: Original strand, 12918560 - 12918700
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||||| |||||||||  |||||||| |||| |||||||||||||| ||||       ||||||||||||| ||||||||||||| |||||||||    
T  12918560 gtgacattggccaaccacaatgtcacatgtggcttttttctttttctttcataagacttttttgttgttttgcacatttgtaacattgtggttggtaatg 12918659  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  12918660 tcaccaatgtcaccaaccacaatgtcacccaagtattatcc 12918700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 148 - 287
Target Start/End: Original strand, 15562232 - 15562371
Alignment:
Q  148 tgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatgt 247  Q
    |||||||||| |||||||||  ||||||||||||||||||||||  |||||  ||       ||||||||||||||||||||||||||| ||||||||||    
T  15562232 tgacattggccaaccacaatgtcacatgtgactttcttcttttttattcactggatttttttgttgttttgcacacttgtaacattgtgattggtaatgt 15562331  T
Q  248 caccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  15562332 caccaatatcaccaaccataatgtcacccaaatattatcc 15562371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 290
Target Start/End: Original strand, 7755363 - 7755497
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||||| |||||||||  |||| ||| |||| |||||||||||| ||||||       ||||||||| ||||||||||||||||| |||||||||    
T  7755363 gtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttttgttgttttgtacacttgtaacattgtgattggtaatg 7755462  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatcccat 290  Q
             ||||||||||||||||||||||| |||||||||||    
T  7755463 ---------tcaccaaccacaatgtcacccaaatattatcccat 7755497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 12918543 - 12918498
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcaccc-aagtattatcc 287  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||    
T  12918543 aatgtcaccaatgtcaccaaccacaatgtcacccaaagtattatcc 12918498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 39819097 - 39819060
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcacccaagt 280  Q
    |||||||||||| |||||||||||||||||||||||||    
T  39819097 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 39819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 147 - 293
Target Start/End: Original strand, 11512414 - 11512560
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||       | ||||||||||||||||||||||||| |||||||||    
T  11512414 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgatgttttgcacacttgtaacattgtggttggtaatg 11512513  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatcccattga 293  Q
    |||||||| |||||||||| |||||||||||||||||||||| ||||    
T  11512514 tcaccaatgtcaccaaccataatgtcacccaagtattatccccttga 11512560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 288
Target Start/End: Complemental strand, 22894030 - 22893890
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||| | |||||||||  |||| ||||||||||||||||||||| ||||||       ||||||||| ||||||||||||||||| |||||||||    
T  22894030 gtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagatttttt-gttgttttgtacacttgtaacattgtggttggtaatg 22893932  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatccc 288  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  22893931 tcaccaatgtcaccaaccacaatgtcacccaagtattatccc 22893890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 31342034 - 31342140
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||||| |||||||||  |||||||  ||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||    
T  31342034 gtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggtaatg 31342133  T
Q  247 tcaccaa 253  Q
    |||||||    
T  31342134 tcaccaa 31342140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 148 - 253
Target Start/End: Original strand, 20286932 - 20287037
Alignment:
Q  148 tgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatgt 247  Q
    |||||||||| |||||||||  |||||||| ||||||||||||||||| ||||||       ||||||||||||||||||||||||||| ||||||||||    
T  20286932 tgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagacttttttgttgttttgcacacttgtaacattgtggttggtaatgt 20287031  T
Q  248 caccaa 253  Q
    ||||||    
T  20287032 caccaa 20287037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 29081655 - 29081598
Alignment:
Q  222 acttgtaacattgtgtttggt-aatgtcaccaatatcaccaaccacaatgtcacccaa 278  Q
    |||||| |||||||| ||||| ||||||||| || |||||||||||||||||||||||    
T  29081655 acttgtgacattgtggttggtcaatgtcaccgatgtcaccaaccacaatgtcacccaa 29081598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 49159502 - 49159539
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcacccaagt 280  Q
    |||||||||||| |||||||||||||||||||||||||    
T  49159502 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 49159539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 1150638 - 1150590
Alignment:
Q  303 ccattgattcat-catcatcgatagtttaatttaaagttaaaagtttga 350  Q
    |||||||||||| |||||||||||||||||||| || ||||||||||||    
T  1150638 ccattgattcattcatcatcgatagtttaatttgaaattaaaagtttga 1150590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 5633181 - 5633213
Alignment:
Q  251 caatatcaccaaccacaatgtcacccaagtatt 283  Q
    |||||||||||||||||||||||||||||||||    
T  5633181 caatatcaccaaccacaatgtcacccaagtatt 5633213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 25790897 - 25790941
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||    
T  25790897 aatgtcaccaatgtcaccaaccataatgtcacccaaatattatcc 25790941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 48342824 - 48342782
Alignment:
Q  249 accaatatcaccaaccacaatgtcacccaagtattatcccatt 291  Q
    |||||| || ||||||| |||||||||||||||||||||||||    
T  48342824 accaatgtcgccaaccataatgtcacccaagtattatcccatt 48342782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 291
Target Start/End: Original strand, 43465102 - 43465260
Alignment:
Q  136 gtagcacttaagtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacatt-- 233  Q
    |||||||||  ||||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||       ||||||||||||||||||||||||      
T  43465102 gtagcacttgggtgacattggccaaccacaatatcacatgtggctttcttctttttttttcacaagatttttttgttgttttgcacacttgtaacattgt 43465201  T
Q  234 -gtgtttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatcccatt 291  Q
     ||| |||||||| |||||||| |||||||||| ||||||| |||||||||||||||||    
T  43465202 ggtggttggtaatttcaccaatgtcaccaaccagaatgtcatccaagtattatcccatt 43465260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 16687557 - 16687510
Alignment:
Q  242 taatgtcaccaatatcaccaaccacaatgtcacccaagtattatccca 289  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  16687557 taatgtcaccaatatcaccaaccacaatgtcatccaagtattatccca 16687510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 287
Target Start/End: Original strand, 31470771 - 31470913
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggt-aat 245  Q
    ||||||||| | |||||||||  |||| ||  | |||||||||||||||||||| |       |||  |||| |||||||| |||||||| ||||  |||    
T  31470771 gtgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggccaat 31470870  T
Q  246 gtcaccaatatcaccaaccacaatgtca-cccaagtattatcc 287  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||    
T  31470871 gtcaccaataccaccaaccacaatatcaccccaagtattatcc 31470913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 1605038 - 1605082
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  1605038 aatgtcaccaatgtcaccaactacaatgtcacccaagtattatcc 1605082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 287
Target Start/End: Complemental strand, 31846922 - 31846782
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    |||| |||||| |||||||||  |||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||| || |||||||||    
T  31846922 gtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattttggttggtaatg 31846823  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||| ||| |||||||||| |||||||||||||||||||||    
T  31846822 tcacgaatgtcaccaaccataatgtcacccaagtattatcc 31846782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 147 - 287
Target Start/End: Original strand, 31012154 - 31012294
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||| | |||||||||  ||||||||||||| |||||||||||||||||         ||||||||||| |||||||| |||||| |||||||||    
T  31012154 gtgacattgaccaaccacaatgtcacatgtgacttttttctttttctttcacaatttttttttgttgttttgcatacttgtaatattgtggttggtaatg 31012253  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||| ||| |||||||||||||||||||| |||||||||||    
T  31012254 tcactaatgtcaccaaccacaatgtcacctaagtattatcc 31012294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 6607542 - 6607420
Alignment:
Q  131 ttcgggtagcacttaagtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaac 230  Q
    ||||||||||||||  ||||||||| | ||||| |||  |||||||| ||||||||||||||||||||||||       |||||||||||||||||||||    
T  6607542 ttcgggtagcacttgggtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaac 6607443  T
Q  231 attgtgtttggtaatgtcaccaa 253  Q
    |||||| ||||||||||||||||    
T  6607442 attgtggttggtaatgtcaccaa 6607420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 6608439 - 6608500
Alignment:
Q  210 gttgttttgcacacttgtaacattgtgtttggtaatgtcaccaatatcaccaaccacaatgt 271  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  6608439 gttgttttgcagacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgt 6608500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 2254622 - 2254698
Alignment:
Q  210 gttgttttgcacacttgtaacattgtgtttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatc 286  Q
    ||||||||| ||||||||||||||||| |||||||| ||| |||| |||| ||||||||||||||  ||||||||||    
T  2254622 gttgttttgtacacttgtaacattgtgattggtaatatcatcaatgtcacgaaccacaatgtcacataagtattatc 2254698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 46321429 - 46321496
Alignment:
Q  214 ttttgcacacttgtaacattgtgtttggt-aatgtcaccaatatcaccaaccacaatgtcacccaagt 280  Q
    ||||| ||| |||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||    
T  46321429 ttttgtacagttgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagt 46321496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 32008336 - 32008402
Alignment:
Q  220 acacttgtaacattgtgtttggt-aatgtcaccaatatcaccaaccacaatgtcacccaagtattat 285  Q
    |||||||||||||| || ||||| ||| |||| ||| ||||||||||||||||||||||||| ||||    
T  32008336 acacttgtaacattttggttggtcaatatcactaatgtcaccaaccacaatgtcacccaagtgttat 32008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 31012176 - 31012124
Alignment:
Q  229 acattgtgtttggt-aatgtcaccaatatcaccaaccacaatgtcacccaagt 280  Q
    |||||||| ||||| |||||||||| ||||||||||||||||||||| |||||    
T  31012176 acattgtggttggtcaatgtcaccattatcaccaaccacaatgtcacacaagt 31012124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 15032020 - 15031965
Alignment:
Q  231 attgtgtttggt-aatgtcaccaatatcaccaaccacaatgtcacccaagtattat 285  Q
    |||||| ||||| |||||||| ||||||| ||||||||||||||||||||| ||||    
T  15032020 attgtggttggtcaatgtcacgaatatcatcaaccacaatgtcacccaagtgttat 15031965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 31846919 - 31846952
Alignment:
Q  247 tcaccaatatcaccaaccacaatgtcacccaagt 280  Q
    |||||||| |||||||||||||||||||||||||    
T  31846919 tcaccaatgtcaccaaccacaatgtcacccaagt 31846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 33380737 - 33380774
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcacccaagt 280  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  33380737 aatgtcacaaatatcaccaaccacaatgtcatccaagt 33380774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 36273080 - 36273116
Alignment:
Q  251 caatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  36273080 caatatcaccgaccacaatgtcacccaagtgttatcc 36273116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 54613082 - 54613030
Alignment:
Q  229 acattgtgtttggt-aatgtcaccaatatcaccaaccacaatgtcacccaagt 280  Q
    |||||||| ||||| |||| ||| ||| |||||||||||||||||||||||||    
T  54613082 acattgtggttggtcaatgccactaatgtcaccaaccacaatgtcacccaagt 54613030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 147 - 288
Target Start/End: Complemental strand, 2543874 - 2543734
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||||| |||||||||  |||||||| |||| || |||||||||||||| |       |||||||| |||||||||||||||||| |||||||||    
T  2543874 gtgacattggccaaccacaatgtcacatgtggcttttttttttttctttcacaa-atttttttgttgttttacacacttgtaacattgtggttggtaatg 2543776  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatccc 288  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  2543775 tcaccaatgtcaccaaccacaatgtcacccaagtattatccc 2543734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 11448147 - 11448224
Alignment:
Q  210 gttgttttgcacacttgtaacattgtgtttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11448147 gttgttttgcacacttataacattgtggttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 11448224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 16193850 - 16193888
Alignment:
Q  249 accaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  16193850 accaatgtcaccaaccacaatgtcacccaagtattatcc 16193888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 23917051 - 23917096
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcacccaagtattatccc 288  Q
    ||||||| ||||||||||||||||| |||||||||||  |||||||    
T  23917051 aatgtcatcaatatcaccaaccacactgtcacccaagagttatccc 23917096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 28581768 - 28581731
Alignment:
Q  250 ccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  28581768 ccaatgtcaccaaccacaatgtcagccaagtattatcc 28581731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 369542 - 369578
Alignment:
Q  251 caatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  369542 caatgtcaccaaccacaatgtcactcaagtattatcc 369578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 5150663 - 5150619
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    ||||||| |||| ||||||| |||||||||||| |||||||||||    
T  5150663 aatgtcatcaatgtcaccaagcacaatgtcaccaaagtattatcc 5150619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 148 - 287
Target Start/End: Complemental strand, 5215700 - 5215560
Alignment:
Q  148 tgacattggctaaccacaataacacatgtgacttt-cttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    |||||||||  |||||||||| |||||||| |||| ||| ||||||||||||||||       ||||||||| ||||||||||||||||| |||||||||    
T  5215700 tgacattggtcaaccacaatatcacatgtggcttttcttatttttctttcacaagattttgttgttgttttgtacacttgtaacattgtggttggtaatg 5215601  T
Q  247 tcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    |||||||| | ||||||||||||||||||||||||||||||    
T  5215600 tcaccaatgttaccaaccacaatgtcacccaagtattatcc 5215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 147 - 271
Target Start/End: Original strand, 19417472 - 19417595
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||||  ||| |||||  ||||||||||||||||  |||||||||||||||       ||||||||||||||||| ||||||||| |||||||||    
T  19417472 gtgacattggtcaactacaatgtcacatgtgactttctttcttttctttcacaagatttttttgttgttttgcacacttg-aacattgtggttggtaatg 19417570  T
Q  247 tcaccaatatcaccaaccacaatgt 271  Q
    |||||||| ||||||||||||||||    
T  19417571 tcaccaatgtcaccaaccacaatgt 19417595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 9177976 - 9177863
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    |||| |||||| |||||||||| ||||||||||||||||||||||||||||||| |        ||||||||||||||| |||||||||| |||||| ||    
T  9177976 gtgatattggccaaccacaatatcacatgtgactttcttctttttctttcacaatatttttttattgttttgcacacttataacattgtggttggtagtg 9177877  T
Q  247 tcaccaatatcacc 260  Q
    ||| |||| |||||    
T  9177876 tcatcaatgtcacc 9177863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 29385416 - 29385303
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatg 246  Q
    ||||||||||| |||||||||  |||||||| |||||||||||||||||| | |||       ||||||||||||||||||||||||||| ||||||||     
T  29385416 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcgctagatttttttgttgttttgcacacttgtaacattgtggttggtaata 29385317  T
Q  247 tcaccaatatcacc 260  Q
    |||| ||| |||||    
T  29385316 tcactaatgtcacc 29385303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 36568755 - 36568871
Alignment:
Q  170 cacatgtgactttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgtttggtaatgtcaccaatatcaccaaccacaat 269  Q
    |||||||| |||||||| ||||||||||||| |       ||||||||| ||||||||||||||||| ||| | ||||||| ||| ||||||||||||||    
T  36568755 cacatgtggctttcttccttttctttcacaatatttttt-gttgttttgtacacttgtaacattgtggttgattatgtcactaatgtcaccaaccacaat 36568853  T
Q  270 gtcacccaagtattatcc 287  Q
    |||||  |||||||||||    
T  36568854 gtcacataagtattatcc 36568871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 1839999 - 1840053
Alignment:
Q  148 tgacattggctaaccacaataacacatgtgactttcttctttttctttcacaaga 202  Q
    |||||||||| |||||||||  |||||||| ||||||||||||||||||||||||    
T  1839999 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaaga 1840053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 7137698 - 7137637
Alignment:
Q  221 cacttgtaacattgtgtttggt-aatgtcaccaatatcaccaaccacaatgtcacccaagta 281  Q
    ||||||| |||||||| ||||| |||||||||||| ||||||||  ||||||||||||||||    
T  7137698 cacttgtgacattgtggttggtcaatgtcaccaatttcaccaactgcaatgtcacccaagta 7137637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 19417479 - 19417442
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcacccaagt 280  Q
    |||||||||||| |||||||||||||||||||||||||    
T  19417479 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 19417442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 29385409 - 29385446
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcacccaagt 280  Q
    |||||||||||| |||||||||||||||||||||||||    
T  29385409 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 29385446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 41288004 - 41288041
Alignment:
Q  250 ccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  41288004 ccaatatcaccaaccacaatgtcacccaaatattatcc 41288041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 25879376 - 25879328
Alignment:
Q  211 ttgttttgcacacttgtaacattgtgtttggtaatgtcaccaatatcac 259  Q
    |||||||  ||||||||||||||||| ||| ||||||||||||||||||    
T  25879376 ttgttttatacacttgtaacattgtggttgataatgtcaccaatatcac 25879328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 23219413 - 23219360
Alignment:
Q  147 gtgacattggctaaccacaataacacatgtgactttcttctttttctttcacaa 200  Q
    ||||| ||||| |||||||||  || || |||||||||||||||||||||||||    
T  23219413 gtgaccttggccaaccacaatgtcatatatgactttcttctttttctttcacaa 23219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 896304 - 896268
Alignment:
Q  251 caatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  896304 caatatcaccaaccacaatctcacccaagtgttatcc 896268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 12270 - 12226
Alignment:
Q  243 aatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||    
T  12270 aatgtcatcaatgtcaccaactacaatgtcacccaagtattatcc 12226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 26631 - 26667
Alignment:
Q  251 caatatcaccaaccacaatgtcacccaagtattatcc 287  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  26631 caatatcaccaaccacaatgtcatccaagtgttatcc 26667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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