View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14943_low_17 (Length: 313)

Name: NF14943_low_17
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14943_low_17
NF14943_low_17
[»] chr3 (17 HSPs)
chr3 (105-294)||(28048070-28048259)
chr3 (168-294)||(27910439-27910565)
chr3 (177-294)||(28144534-28144651)
chr3 (105-287)||(27967912-27968094)
chr3 (110-287)||(27999241-27999421)
chr3 (105-293)||(28471596-28471784)
chr3 (105-293)||(28491637-28491825)
chr3 (128-254)||(28178711-28178840)
chr3 (105-254)||(28080088-28080240)
chr3 (105-293)||(28512642-28512830)
chr3 (175-266)||(11409457-11409548)
chr3 (175-287)||(19049988-19050100)
chr3 (105-277)||(27463626-27463798)
chr3 (175-287)||(17748668-17748780)
chr3 (182-266)||(28130616-28130700)
chr3 (18-60)||(17748538-17748580)
chr3 (18-60)||(19049858-19049900)
[»] chr4 (2 HSPs)
chr4 (105-287)||(9329344-9329529)
chr4 (105-287)||(9383127-9383312)
[»] chr7 (1 HSPs)
chr7 (136-284)||(8693983-8694131)
[»] scaffold0854 (1 HSPs)
scaffold0854 (118-161)||(3699-3742)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 105 - 294
Target Start/End: Complemental strand, 28048259 - 28048070
Alignment:
Q  105 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaata 204  Q
    ||||||||||||||||||| || ||||||| | ||||||||||||||||||||||||| ||||||     ||||||||||| ||||||||||||||||||    
T  28048259 ttaccattaagttgtcttgcggttgatcctcataaaccaatgggattttagtacttgtggtactcctcaatttgtgcccatcttttttaccacaacaata 28048160  T
Q  205 tatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctctt 294  Q
    ||||||| |||||||||| ||||||||||| ||||  ||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  28048159 tatatcagtccatgaaaacatattgcatttaattgactctgattgtgcttgtggcttggaagtatctccagaaatggaagatgacctctt 28048070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 168 - 294
Target Start/End: Complemental strand, 27910565 - 27910439
Alignment:
Q  168 tcaattttttgtgcccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagt 267  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  27910565 tcaatttgttgtgcccatattttttaccacaacaatatatgtcagtccatgaaaacatattgcatttgattggctttgattgttcttctggcttggaagt 27910466  T
Q  268 atctccagaaatggaagatgacctctt 294  Q
    |||||||||||||||||||||||||||    
T  27910465 atctccagaaatggaagatgacctctt 27910439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 177 - 294
Target Start/End: Complemental strand, 28144651 - 28144534
Alignment:
Q  177 tgtgcccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccaga 276  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  28144651 tgtgcccatatattttaccacaacaatatatatcagtccatgaaaacatattgcatttgattggctctgattgttcttgtggcttggaagcatctccaga 28144552  T
Q  277 aatggaagatgacctctt 294  Q
    ||||||||||||||||||    
T  28144551 aatggaagatgacctctt 28144534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 105 - 287
Target Start/End: Complemental strand, 27968094 - 27967912
Alignment:
Q  105 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaata 204  Q
    |||||||||||||||| || || ||||||| ||||||||||||||||| ||||||||| ||||||    |||||||||||||||||| ||||||||| ||    
T  27968094 ttaccattaagttgtcatgcggttgatcctcagaaaccaatgggatttcagtacttgtggtactcctcattttgtgcccatatttttcaccacaacagta 27967995  T
Q  205 tatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatg 287  Q
    ||||| | |||||||||| ||||||||||||||||| |||||||| |||| |||||  |||| || |||| ||||||||||||    
T  27967994 tatataagtccatgaaaacatattgcatttgattggctctgattgctcttgtggctctgaagcatatccaaaaatggaagatg 27967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 110 - 287
Target Start/End: Complemental strand, 27999421 - 27999241
Alignment:
Q  110 attaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactc---aattttttgtgcccatattttttaccacaacaatata 206  Q
    |||| ||| |||||| | ||||||| |||||||||||| | ||||||| |||| ||||||   ||||| ||||| |||||||||||||||||||||||||    
T  27999421 attacgttctcttgttgttgatcctcagaaaccaatggaactttagtatttgtggtactcctcaatttgttgtggccatattttttaccacaacaatata 27999322  T
Q  207 tatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatg 287  Q
    ||||  |||||||||| ||||||||||||||||| |||||||||  || ||| ||||||| ||||||||||||||||||||    
T  27999321 tatctgtccatgaaaatatattgcatttgattggctctgattgtgtttgtgggttggaagcatctccagaaatggaagatg 27999241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 105 - 293
Target Start/End: Original strand, 28471596 - 28471784
Alignment:
Q  105 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaata 204  Q
    |||||||||||||||| ||| | |||||||  |||||||||| ||||| |||||||||  |||||  |  |||||||||||| ||||||||||| |||||    
T  28471596 ttaccattaagttgtcctgttgttgatcctgggaaaccaatgagatttcagtacttgtgttactccttaatttgtgcccatactttttaccacagcaata 28471695  T
Q  205 tatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctct 293  Q
    || || | |||||||||||||||||| |||||||||  ||||||||  || |||||| |||| || |||||||||||||||||||||||    
T  28471696 tacattagtccatgaaaagatattgcgtttgattggacctgattgtgtttgtggcttagaagcatatccagaaatggaagatgacctct 28471784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 105 - 293
Target Start/End: Original strand, 28491637 - 28491825
Alignment:
Q  105 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaata 204  Q
    |||||||||||||||| ||| | |||||||  |||||||||| ||||| |||||||||  |||||  |  |||||||||||| ||||||||||| |||||    
T  28491637 ttaccattaagttgtcctgttgttgatcctgggaaaccaatgagatttcagtacttgtgttactccttaatttgtgcccatactttttaccacagcaata 28491736  T
Q  205 tatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctct 293  Q
    || || | |||||||||||||||||| |||||||||  ||||||||  || |||||| |||| || |||||||||||||||||||||||    
T  28491737 tacattagtccatgaaaagatattgcgtttgattggacctgattgtgtttgtggcttagaagcatatccagaaatggaagatgacctct 28491825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 128 - 254
Target Start/End: Complemental strand, 28178840 - 28178711
Alignment:
Q  128 tgatccttagaaaccaatgggattttagtacttgtagtactc---aattttttgtgcccatattttttaccacaacaatatatatcattccatgaaaaga 224  Q
    ||||||| |||||||||||||||||| ||| |||| ||||||   ||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |    
T  28178840 tgatcctgagaaaccaatgggattttcgtaattgtggtactcctcaatttgttgtgcccatattttttaccacaacaatagatatcagtccatgaaaaca 28178741  T
Q  225 tattgcatttgattgggtctgattgttctt 254  Q
    |||||||||||||||| |||||||||||||    
T  28178740 tattgcatttgattggctctgattgttctt 28178711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 105 - 254
Target Start/End: Complemental strand, 28080240 - 28080088
Alignment:
Q  105 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactc---aattttttgtgcccatattttttaccacaaca 201  Q
    ||||||||  |||||| || || ||||||| ||||| |||||||||||||||  |||||||||||   |||||  |||| |||||||||||||||||| |    
T  28080240 ttaccattttgttgtcctgcggttgatcctcagaaaacaatgggattttagtctttgtagtactcctcaatttgctgtgtccatattttttaccacaaaa 28080141  T
Q  202 atatatatcattccatgaaaagatattgcatttgattgggtctgattgttctt 254  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  28080140 atatatatcagtccatgaaaacatattgcatttgattgggtctgattgttctt 28080088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 105 - 293
Target Start/End: Original strand, 28512642 - 28512830
Alignment:
Q  105 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaata 204  Q
    |||||||||||||||| ||| | |||||||  |||||||||| ||||| |||||||||  |||||  |  |||||||||||| ||||||||||| |||||    
T  28512642 ttaccattaagttgtcctgttgttgatcctgggaaaccaatgagatttcagtacttgtgttactccttaatttgtgcccatactttttaccacagcaata 28512741  T
Q  205 tatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatgacctct 293  Q
    || || | |||||||||||||||||| |||||||||  | ||||||  || |||||| |||| || |||||||||||||||||||||||    
T  28512742 tacattagtccatgaaaagatattgcgtttgattggacccgattgtgtttgtggcttagaagcatatccagaaatggaagatgacctct 28512830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 175 - 266
Target Start/End: Complemental strand, 11409548 - 11409457
Alignment:
Q  175 tttgtgcccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaag 266  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  11409548 tttgtgcccattttttttaccacaacaatatatatcaatccatgaaaagatattgcatttgattgggtctgattgtgcttgtggcttggaag 11409457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 19049988 - 19050100
Alignment:
Q  175 tttgtgcccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctcca 274  Q
    ||||||||||| ||||||||| |||||||||| || | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||    
T  19049988 tttgtgcccattttttttaccccaacaatatacattagtccatgaaaagatattgcatttgatagggtctgattgttcttgtggcttggaagcatatcca 19050087  T
Q  275 gaaatggaagatg 287  Q
    || ||||||||||    
T  19050088 gatatggaagatg 19050100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 105 - 277
Target Start/End: Original strand, 27463626 - 27463798
Alignment:
Q  105 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaata 204  Q
    |||||||||||||||| ||  | ||||||| |||||| |||||||| ||||||||||| ||||||     ||||| |||| |||||||||||||||||||    
T  27463626 ttaccattaagttgtcctgccgttgatcctgagaaacgaatgggatgttagtacttgtggtactcctcaatttgttcccaaattttttaccacaacaata 27463725  T
Q  205 tatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaa 277  Q
    ||||||| ||  ||||||||| |||||||| |||||| |||||| | ||| ||||||||| | ||||||||||    
T  27463726 tatatcagtctgtgaaaagatgttgcatttcattgggcctgattctgcttgtggcttggaggcatctccagaa 27463798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 17748668 - 17748780
Alignment:
Q  175 tttgtgcccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctcca 274  Q
    ||||||||||| ||||||||| |||||||||| || | ||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||| || ||||    
T  17748668 tttgtgcccattttttttaccccaacaatatacattagtccatgaaaagatattgcatttgatagggtctgatttttcttgtggctgggaagcatatcca 17748767  T
Q  275 gaaatggaagatg 287  Q
    || ||||||||||    
T  17748768 gatatggaagatg 17748780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 28130700 - 28130616
Alignment:
Q  182 ccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaag 266  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||  | |||||| ||||||||||||||||    
T  28130700 ccatattttttaccacaacaatatatatcagtccatgaaaacatattgcatttgattgactttgattgatcttctggcttggaag 28130616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 17748538 - 17748580
Alignment:
Q  18 atgtatcaatagtttcttattaacaaagtataaaaaataacat 60  Q
    |||||||||||||||||| |||| ||||| |||||||||||||    
T  17748538 atgtatcaatagtttcttgttaaaaaagtgtaaaaaataacat 17748580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 19049858 - 19049900
Alignment:
Q  18 atgtatcaatagtttcttattaacaaagtataaaaaataacat 60  Q
    |||||||||||||||||| |||| ||||| |||||||||||||    
T  19049858 atgtatcaatagtttcttgttaaaaaagtgtaaaaaataacat 19049900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 105 - 287
Target Start/End: Original strand, 9329344 - 9329529
Alignment:
Q  105 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactc---aattttttgtgcccatattttttaccacaaca 201  Q
    ||||||||| |||||| || || ||||||| ||||||||||| | || ||| | || | ||||||   ||||| ||||||| |||| |||||||||||||    
T  9329344 ttaccattatgttgtcctgcggttgatcctcagaaaccaatgaggttgtagcatttttggtactcctcaatttgttgtgcctatatattttaccacaaca 9329443  T
Q  202 atatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatg 287  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||| || |||||| ||||||||||    
T  9329444 atatatatcagtccatgaaaatatattgcatttgatagggtctgattgttcttgtggcttggaagcatatccagatatggaagatg 9329529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 105 - 287
Target Start/End: Original strand, 9383127 - 9383312
Alignment:
Q  105 ttaccattaagttgtcttgtggatgatccttagaaaccaatgggattttagtacttgtagtactc---aattttttgtgcccatattttttaccacaaca 201  Q
    ||||||||| |||||| || || ||||||| ||||||||||| | || ||| | || | ||||||   ||||| ||||||| |||| |||||||||||||    
T  9383127 ttaccattatgttgtcctgcggttgatcctcagaaaccaatgaggttgtagcatttttggtactcctcaatttgttgtgcctatatattttaccacaaca 9383226  T
Q  202 atatatatcattccatgaaaagatattgcatttgattgggtctgattgttcttctggcttggaagtatctccagaaatggaagatg 287  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||| || |||||| ||||||||||    
T  9383227 atatatatcagtccatgaaaatatattgcatttgatagggtctgattgttcttgtggcttggaagcatatccagatatggaagatg 9383312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 136 - 284
Target Start/End: Original strand, 8693983 - 8694131
Alignment:
Q  136 agaaaccaatgggattttagtacttgtagtactcaattttttgtgcccatattttttaccacaacaatatatatcattccatgaaaagatattgcatttg 235  Q
    |||||||||||||||||||||||||||  |||||     ||||||||||||||||||||| ||||  ||||||||| | ||||||||||||||| |||||    
T  8693983 agaaaccaatgggattttagtacttgtgttactcctcaatttgtgcccatattttttaccgcaactgtatatatcagttcatgaaaagatattgaatttg 8694082  T
Q  236 attgggtctgattgttcttctggcttggaagtatctccagaaatggaag 284  Q
    ||||||||||||||||||| | |||  |||| |||||||||||||||||    
T  8694083 attgggtctgattgttcttgttgctcagaagcatctccagaaatggaag 8694131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 3699 - 3742
Alignment:
Q  118 gtcttgtggatgatccttagaaaccaatgggattttagtacttg 161  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    
T  3699 gtcttttggatgatcctcagaaaccaatgggattttagtacttg 3742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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