View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_low_22 (Length: 292)
Name: NF14943_low_22
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 6961836 - 6961563
Alignment:
| Q |
4 |
ataaaccgagacaacttaaccaaagtgcgatcnnnnnnnggaatgatgaatagaagagagacaaagtgaaacatacagaaacaacaagagcagaggttgc |
103 |
Q |
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| T |
6961836 |
ataaaccgaga-aacttaatcaaagtgcgatcaaaaaaaggaatgatcaatagaagagagacaaagtgaaacatacagaaacaacaagagcagaggttgc |
6961738 |
T |
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| Q |
104 |
aagagcaaatcctgcaattttagcagaatcagcaaacctatgagctatgtcttgaagagaacaagtgagcttagctccattgtgttccaagccaaaagcc |
203 |
Q |
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| T |
6961737 |
aagagcaaatcctgcaattttagcagaatcagcaaacctatgagctatgtcctgaagagaacaagtgagcttagctccattgtgttccaagccaaaagcc |
6961638 |
T |
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| Q |
204 |
ttagaaatggattgtgttgacttgagatgtaaagtggtgctacgattattgataccaatcttagttggttgcatg |
278 |
Q |
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| T |
6961637 |
ttagaaatggattgtgttgacttgagatgtaaagtggtgctacgattattgataccaatcttagttggttgcatg |
6961563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 33607533 - 33607624
Alignment:
| Q |
156 |
tgaagagaacaagtgagcttagctccattgtgttccaagccaaaagccttagaaatggattgtgttgacttgagatgtaaagtggtgctacg |
247 |
Q |
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| T |
33607533 |
tgaagtgaacaagtaaccttagctccatagtgttccaaaccaaaagccttagaaacagattgagtagacttaagctgcaaactgttgctacg |
33607624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 33607438 - 33607491
Alignment:
| Q |
73 |
aacatacagaaacaacaagagcagaggttgcaagagcaaatcctgcaattttag |
126 |
Q |
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| T |
33607438 |
aacatacagagacaacgagagcagaggtagcaagagcaaatccagcaatcttag |
33607491 |
T |
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