View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_low_25 (Length: 243)
Name: NF14943_low_25
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24034824 - 24035048
Alignment:
| Q |
1 |
tgttttggatgggtgaaacgtcggtgtcgtcggtgtatgagtagagatgttgaagttggaggggttggggctaaggttatggtttgtgatgaagaagtgg |
100 |
Q |
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| T |
24034824 |
tgttttggatgggtgaaacgtcggtgtcgtcgatgtatgagtagagatgttgaagttggaggcgttggggctaaggttatggtttgtgatgaagaagtgg |
24034923 |
T |
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| Q |
101 |
agaatgattgcaaggtcaaagatggtgatgttcaagtttagnnnnnnnnnnnnataggtagatgtttgtataagagatcgatcgaatattggacctctta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24034924 |
agaatgattgcaaggtcaaagatggtgatgttcaagtttagtttttctttttcataggtagatgtttgtataagagatcgatcgaatattggacttctta |
24035023 |
T |
|
| Q |
201 |
tatataatttcttcaatgtctaaat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
24035024 |
tatataatttcttcaatgtctaaat |
24035048 |
T |
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