View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_low_29 (Length: 236)
Name: NF14943_low_29
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_low_29 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 27730906 - 27731129
Alignment:
| Q |
18 |
ttcctgatcatatgaa-agtcaatgattcatacagaaactatatgtggtacataattatatttgcattgaaatatatgatgattacaagaatt---caag |
113 |
Q |
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| T |
27730906 |
ttcctgatcacatgaacagtcaatgattcatacagaaactatatgtagtatatgattcaatttgcattgaaatatatgattattacaagaattagtctag |
27731005 |
T |
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| Q |
114 |
acagtaataagttttgattagtttggcaaattaaacaatgatatttgttagtccaaatgttcagttgcttctgttcttataggaataacacta-aagtaa |
212 |
Q |
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| T |
27731006 |
ccagtaataagttttaattagtttgtcaaattaaacaatgatatttgttagtccaaatgttcagttgcttctattcttacaggaataacactataagtaa |
27731105 |
T |
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| Q |
213 |
attgcacgtgcatatcaaagtcac |
236 |
Q |
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| T |
27731106 |
attgcacatgcatatcaaagtcac |
27731129 |
T |
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