View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_low_30 (Length: 232)
Name: NF14943_low_30
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 38613630 - 38613476
Alignment:
| Q |
1 |
gaccagagatgatgatgatggccaaacttgctacgagatagaaaaataaataaaagtagagaacaaagaaggagatggaacggcaccttcagatatgaag |
100 |
Q |
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| T |
38613630 |
gaccagagaagatgatgatggccaaacttgttacgagatagaaaaataaataaaagtagagaacaaagaaggagatggaacggcaccttcagatatgaag |
38613531 |
T |
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| Q |
101 |
ttcctgaatttgttggcaaagcaaaggagctctgtgaaatatttagtaagaatta |
155 |
Q |
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| T |
38613530 |
ttcctgaatttgttggcaaagcaaaggagctctgtggaatatttagtaagaatta |
38613476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 38612218 - 38612141
Alignment:
| Q |
147 |
taagaattaacatcagatcattttctaaacaggaaaaatacaagagataacaccaataataacggcaccagaataatg |
224 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38612218 |
taagaattaacatcagatcattttctaaacagaaaaaatacaagagataacaccaataataacggcaccagaagaatg |
38612141 |
T |
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