View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_low_31 (Length: 229)
Name: NF14943_low_31
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 5439833 - 5440044
Alignment:
| Q |
1 |
gacgtaagaacctcatactgagtcataattaagtgggactggacaataatgcataaaattcacgttt-cttgtttgtagtgccattaactaaaaagaggg |
99 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
5439833 |
gacgtaagaacctcatactgagtcataattaagtgggattggacaataatgcataaaattcatgttttcttgtttgtagtgccattaactaaaaagaggg |
5439932 |
T |
|
| Q |
100 |
tgaaagagcaatcatgttcatagtggagttgcggaccaaaagttttgtcaatgaatcatgccatgaagggagaaactcacagtcgaacacggggcaccat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5439933 |
tgaaagagcaatcatgttcatagtggagttgcggaccaaaagttttgtcaatgaatcatgccatgaagggagaaactcatagtcgaacacggggcaccat |
5440032 |
T |
|
| Q |
200 |
aaactcctgaat |
211 |
Q |
| |
|
|||||||||||| |
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| T |
5440033 |
aaactcctgaat |
5440044 |
T |
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