View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14943_low_33 (Length: 216)
Name: NF14943_low_33
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_low_33 |
 | |
|
| [»] chr7 (10 HSPs) |
| |
|
| [»] scaffold0665 (1 HSPs) |
| | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
| [»] scaffold0500 (1 HSPs) |
| | |
|
| [»] scaffold0440 (1 HSPs) |
| | |
|
| [»] scaffold0352 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 6966750 - 6966536
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
6966750 |
ttcccataggattacatcagattcatctcaagcttaaccataaagagattagttactcataactacagtacaagataactcacataaaatcaaggattca |
6966651 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6966650 |
tacatgtattggataattgactatgagttgtgatggtctcccaccaaatcttcaaagcctccgctccaaatatgccttttctctct-aaaatcgtgaacc |
6966552 |
T |
|
| Q |
201 |
cttaatctgaaaacgc |
216 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
6966551 |
cttcatctgaaaacgc |
6966536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 17863737 - 17863937
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
17863737 |
ttcccataggattacatcagattcatctcaagcttaaccataaagagattagttactcataactacagtacaagataactcacataaaatcaaggattca |
17863836 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
17863837 |
tacatgtattggataattgactatgagttgtgatggtctcccaccaaatcttcaaagcctccgctccaaatatgtcttttctctct-aaaatcgtgaacc |
17863935 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
17863936 |
ct |
17863937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 17866996 - 17867196
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
17866996 |
ttcccataggattacatcagattcatctcaagcttaaccataaagagattagttactcataactacagtacaagataactcacataaaatcaaggattca |
17867095 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17867096 |
tacatgtattggataattgactatgagttgtgatggtctcccactaaatcttcaaagcctccgctccaaatatgccttttctctct-aaaatcgtgaacc |
17867194 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
17867195 |
ct |
17867196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 24783008 - 24782848
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24783008 |
ttcccataggattacatcagattcatcttaagcttaaccacaaaaagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
24782909 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctc |
161 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24782908 |
tacatgtattggataattgactatgagttgtgatggtctcccaccaaatctacaaagcctc |
24782848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 35773179 - 35773385
Alignment:
| Q |
6 |
ataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcatacat |
105 |
Q |
| |
|
|||||||||||| ||||| |||||| || ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35773179 |
ataggattacataagattcatctcagtctcaaccacaaacagattagttactcatatctaacgtacaagataactcacataaaaacaaggattcatacat |
35773278 |
T |
|
| Q |
106 |
gtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacccttaa |
205 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||| ||| |
|
|
| T |
35773279 |
gtattggatgattgactatgagttgtgatggtctcccaccaaatctacaaagcctccgctccaattatctcttttctctct-aaaatcgtgaacctctaa |
35773377 |
T |
|
| Q |
206 |
tctgaaaa |
213 |
Q |
| |
|
| |||||| |
|
|
| T |
35773378 |
tatgaaaa |
35773385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 294467 - 294254
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagaga-ttagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||| | |||||||||| |||| ||||||||||||| |||||||| ||| ||||| |||||| || || ||||| |
|
|
| T |
294467 |
ttcccataggattacatcagattcatctcaggattaaccacaa-gagaattagttactcatagctaaagtataagctaactaacataagaagaaagattc |
294369 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt-tctctctaaaaatcgtga |
197 |
Q |
| |
|
||||||||| ||||| ||||||||| |||| ||||||| | ||||| |||| | ||| ||| ||||| |||||||| ||| |||| |||| |||||| |
|
|
| T |
294368 |
atacatgtaatggatgattgactattagttttgatggttgctcaccagatctccaaagtctctgctccaaaatatgcttttaggtctc-aaaattcgtga |
294270 |
T |
|
| Q |
198 |
acccttaatctgaaaa |
213 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
294269 |
acccttaatatgaaaa |
294254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 23760251 - 23760430
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || |||||||| |
|
|
| T |
23760251 |
ttcccataggattacatcagattcatctcaggaattaaccacaaaagaattagttactcatagctaaagtataagctaactaacataagaaaaaggattc |
23760350 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt |
179 |
Q |
| |
|
||||| || |||| ||||||| | |||| ||||||| |||||||| |||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
23760351 |
atacaagtgaaggatgattgactcttagttttgatggtttcccaccagatct-ccaagtctctgctccaaaatatgccttt |
23760430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 11279095 - 11278883
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
|||||||||| |||||||||||| |||||| | ||||||||||| |||||||||||||| ||||||| ||| ||||| |||||| || || ||||| |
|
|
| T |
11279095 |
ttcccatagggttacatcagattcatctcacgaattaaccacaaaagaattagttactcataggtaaagtataagctaactaacataagaaaaatgattc |
11278996 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt-tctctctaaaaatcgtga |
197 |
Q |
| |
|
||||||||| |||| ||||||| | |||| ||||||| ||||||| |||| ||||| ||| ||||| |||||||||||| |||| |||| |||||| |
|
|
| T |
11278995 |
atacatgtaaaggatgattgactcttagttttgatggttgcccaccagatct-ccaagtctctgctccaaaatatgcctttaggtctc-aaaattcgtga |
11278898 |
T |
|
| Q |
198 |
acccttaatctgaaa |
212 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
11278897 |
acccttaatcagaaa |
11278883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 3862577 - 3862615
Alignment:
| Q |
40 |
acaaagagattagttactcataactaaagtacaagataa |
78 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
3862577 |
acaaagagattagttacccatagctaaagtacaagataa |
3862615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 33312597 - 33312527
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaag-cttaaccacaaagagattagttactcataactaaagta |
70 |
Q |
| |
|
||||| ||||||||||||||||| |||||| | ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
33312597 |
ttcccgtaggattacatcagattcatctcaggaattaaccacaaaagaattagttactcatagctaaagta |
33312527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13495590 - 13495388
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13495590 |
ttcccataggattacatcatatttatctcaagtttaaccacaaagagattagttactcataactaaagtacaagacaactcacataaaaacaaggattca |
13495491 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13495490 |
tacatgtattggataattgactatgagttgtgttggtctcccaccaaatctacaaagcccccgctccaaatatgccttttctctcataaaatcgtgaacc |
13495391 |
T |
|
| Q |
201 |
ctt |
203 |
Q |
| |
|
||| |
|
|
| T |
13495390 |
ctt |
13495388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 10759724 - 10759524
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
10759724 |
ttcccataggattacatcagattcatctcaagcttaaccataaagagattagttactcataactacagtacaagataactcacataaaatcaaggattca |
10759625 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
10759624 |
tatatgtattggataattgactatgagttgtgatggtctcccaccaaatcttcaaagcctccgctccaaatatgtcttttctctct-aaaatcgtgaacc |
10759526 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
10759525 |
ct |
10759524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13492865 - 13492664
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13492865 |
ttcccataagattacatcaaatttatctcaagtttaaccacaaagagattaattactcataaataaagtacaagaaaactcacataaaaacaaggattca |
13492766 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
13492765 |
tacatgtattggataattgactatgagttgtgttggtctcccaccaaatctacaaagcccccgctccaaatatgctttttctctct-aaaatcgtgaacc |
13492667 |
T |
|
| Q |
201 |
ctt |
203 |
Q |
| |
|
||| |
|
|
| T |
13492666 |
ctt |
13492664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 27282750 - 27282953
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaag-----g |
95 |
Q |
| |
|
|||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | |
|
|
| T |
27282750 |
ttcccataggattatatcagattcatctcaggattaaccacaaagagattagttactcatagctaaagtacaagataactcacataaaaaaaaaaaaaag |
27282849 |
T |
|
| Q |
96 |
attcatacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgt |
195 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
27282850 |
attcatacatgtattggataattgactatgagttgtgatggtctcccaccaaatctacaaagcctccgctccaaatatgtcttttctctct-aaaatcgt |
27282948 |
T |
|
| Q |
196 |
gaacc |
200 |
Q |
| |
|
||||| |
|
|
| T |
27282949 |
gaacc |
27282953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 32506496 - 32506711
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
32506496 |
ttcccataggattacatcagattcatctcaagcttaatcacaaaagaattagttactcatagctaaagtacaagataactaacgtaaaaacaaggattca |
32506595 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc--aaatatgccttttctctctaaaaatcgtgaa |
198 |
Q |
| |
|
||| |||| ||||| |||||||||||||| ||||||| ||||||| |||| | ||||||||||||| ||||||| ||||||||||| ||||| ||||| |
|
|
| T |
32506596 |
tacgtgtattggatgattgactatgagttttgatggttgcccaccagatctccaaagcctccgctccaaaaatatgtcttttctctct-aaaattgtgaa |
32506694 |
T |
|
| Q |
199 |
cccttaatctgaaaacg |
215 |
Q |
| |
|
|||||| | |||||||| |
|
|
| T |
32506695 |
cccttactttgaaaacg |
32506711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 16190819 - 16191030
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
|||| ||| |||||||||||||| |||| | || ||||||||| |||||||||||| ||| |||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
16190819 |
ttcctataagattacatcagattcatctaagactcaaccacaaatagattagttacttatagctaaagtaaacgataactaacataaaaacaaggattca |
16190918 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttttctctctaaaaatcgtgaac |
199 |
Q |
| |
|
|||||||| ||||| ||||||||||| || ||||||| ||||||| |||| | ||||||||||||| ||||||| ||||||||||| |||||||||||| |
|
|
| T |
16190919 |
tacatgtattggatgattgactatgaattttgatggttgcccaccagatctgcaaagcctccgctccaaaatatg-cttttctctct-aaaatcgtgaac |
16191016 |
T |
|
| Q |
200 |
ccttaatctgaaaa |
213 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
16191017 |
acttactctgaaaa |
16191030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1936230 - 1936016
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
|||||||| |||||||| ||||| |||| | || |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
1936230 |
ttcccataagattacatgagattcatctaagtctcaaccacaaagagattagttactcatagctaaagtacaagataactaccatagaaacaaggattca |
1936131 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttttctctctaaaaatcgtgaac |
199 |
Q |
| |
|
||| ||| | ||| | ||| |||||||| |||| ||||||||||| || | | ||||||||||||| ||||||| ||||||||||| |||||| ||||| |
|
|
| T |
1936130 |
tacgagtattagatgactgaatatgagttttgattgtctcccaccagatatgcaaagcctccgctccaaaatatgtcttttctctct-aaaatcatgaac |
1936032 |
T |
|
| Q |
200 |
ccttaatctgaaaacg |
215 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
1936031 |
cctcaatctgaaaacg |
1936016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 15296926 - 15296722
Alignment:
| Q |
11 |
attacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcatacatgtact |
110 |
Q |
| |
|
||||||||||||| |||| | || |||||||||||| || |||| |||| |||||||||||||||||| | ||| || ||||||||| |||| | |
|
|
| T |
15296926 |
attacatcagattcatctagatctcaaccacaaagaggttgattacgcatatctaaagtacaagataactaatgcaaatgtaaagattcatacgtgtatt |
15296827 |
T |
|
| Q |
111 |
ggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcca-aatatgccttttctctctaaaaatcgtgaacccttaatctg |
209 |
Q |
| |
|
|||||| | |||||||||| |||||||||||||||| |||| | |||| | |||||| |||||| ||||||||||| ||||||||||||||| | || | |
|
|
| T |
15296826 |
ggataacttactatgagttttgatggtctcccaccagatctgcaaagctttagctccataatatgtcttttctctct-aaaatcgtgaaccctaattcag |
15296728 |
T |
|
| Q |
210 |
aaaacg |
215 |
Q |
| |
|
|||||| |
|
|
| T |
15296727 |
aaaacg |
15296722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 14790221 - 14790021
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
14790221 |
ttcccataggattacatcagattcatctcaagcttaaccataaagagattagttactcataactacagtacaagataactcacataaaatcaaggattca |
14790122 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14790121 |
tacatgtattggataattgactatgagttgtgatggtctcccaccaaatcttcaaagcctccgctccaaatatgccttttctctct-aaaatcgtgaacc |
14790023 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
14790022 |
ct |
14790021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 14795249 - 14795049
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
14795249 |
ttcccataggattacatcagattcatctcaagcttaaccatgaagagattagttactcataactacagtacaagataactcacataaaatcaaggattca |
14795150 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14795149 |
tacatgtattggataattgactatgagttgtgatggtctcccacaaaatcttcaaagcctccgctccaaatatgccttttctctct-aaaatcgtgaacc |
14795051 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
14795050 |
ct |
14795049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 15534691 - 15534480
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15534691 |
ttcccataggattacatcagattcatctcaatctcaaccacaaagagattagttactcatatctaaagtacaagataactcacataaaaacaaggattca |
15534592 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
15534591 |
tatatgtattggatgattgactatgagttgtgatggtctcccaccaaatctacaaagcctccgctccaattatctcttttctctct-aaaatcgtgaacc |
15534493 |
T |
|
| Q |
201 |
cttaatctgaaaa |
213 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
15534492 |
cctaatctgaaaa |
15534480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 32704896 - 32705086
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
32704896 |
ttcccataggattacatcagattcatctcaagcttaaccataaagagattagttactcataactacagtacaagataactcacataaaatcaaggattca |
32704995 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctac-caagcctccgctccaaatatgccttttctctctaaaa |
190 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32704996 |
tacatgtattggataattgactatgagttgtgatggtctcccaccaaatcttcaaaagcctccgctccaaatatgccttttctctctaaaa |
32705086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 19665307 - 19665518
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19665307 |
ttcccataggattacatcagattcatctcagtctcaaccacaaagagattagttactcatatataaagtacaagataactcacataaaaacaaggattca |
19665406 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
19665407 |
tacatgtattggatgattgactatgagttgtgatggtctcccaccaaatctacaaagcctccgctccaattatctcttttctctct-aaaatcgtgaacc |
19665505 |
T |
|
| Q |
201 |
cttaatctgaaaa |
213 |
Q |
| |
|
| | ||||||||| |
|
|
| T |
19665506 |
cctcatctgaaaa |
19665518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1838076 - 1837863
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
1838076 |
ttcccataggattacatcagattcatctcagtctcaaccacaaagagattagttactcatatctaaagtacaagataactcacataaaaataaggtttca |
1837977 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
1837976 |
tacatgtattggatgattgactatgagttgtgatggtctcccaccaaatctacaaagcctccgctccaattatctcttttctctct-aaaatcgtgaacc |
1837878 |
T |
|
| Q |
201 |
cttaatctgaaaacg |
215 |
Q |
| |
|
|||| | |||||||| |
|
|
| T |
1837877 |
cttactttgaaaacg |
1837863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 15537886 - 15537675
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
|||||||| |||||||||| ||| |||||| || |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
15537886 |
ttcccatatgattacatcaaattcatctcagtctcaaccacaaagagattagttactcatatctaatgtacaagataactcacataaaaacaaggagtca |
15537787 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| | ||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
15537786 |
tacatgtattagatgattgactatgagttgtgatggtctcccaccaaatctacaaagcttccgctccaaatatctcttttctctct-aaaatcgtgaacc |
15537688 |
T |
|
| Q |
201 |
cttaatctgaaaa |
213 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
15537687 |
cctaatctgaaaa |
15537675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 32426967 - 32426781
Alignment:
| Q |
5 |
cataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcataca |
104 |
Q |
| |
|
|||||||||| |||| ||| |||||||||||||||||||| ||||||||||| || |||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
32426967 |
cataggattatatcatattcatctcaagcttaaccacaaaagaattagttactcctagctaaagtacaagataactaacgtaaaaacaaggattcataca |
32426868 |
T |
|
| Q |
105 |
tgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttttctctctaaaa |
190 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||| ||||||| |||| | ||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
32426867 |
tgtattggatgattgactatgagttttgatggttgcccaccagatctccaaagtctccgctccaaaatatgccttttctctctaaaa |
32426781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 32426741 - 32426574
Alignment:
| Q |
48 |
attagttactcataactaaagtacaagataactcacataaaaacaaggattcatacatgtactggataattgactatgagttgtgatggtctcccaccaa |
147 |
Q |
| |
|
||||||||||| || |||||||||||||||||| || ||||||||||||||||||| |||| ||||| |||||||||||||| ||||||| | ||||| |
|
|
| T |
32426741 |
attagttactcctagctaaagtacaagataactaacgtaaaaacaaggattcatacgtgtattggatgattgactatgagttttgatggttgctcaccag |
32426642 |
T |
|
| Q |
148 |
atctaccaagcctccgctcc-aaatatgccttttctctctaaaaatcgtgaacccttaatctgaaaacg |
215 |
Q |
| |
|
|||| | ||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
32426641 |
atctccaaagtctccgctccaaaatatgccttttctctct-aaaatcgtgaacccttattctgaaaacg |
32426574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 7770053 - 7770188
Alignment:
| Q |
11 |
attacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcatacatgtact |
110 |
Q |
| |
|
||||||||||||| |||| | || |||||||| ||||||||||||||||| |||||||||||||| || | |||| || |||||||||||||| | |
|
|
| T |
7770053 |
attacatcagattcatctaagtctcaaccacaaggagattagttactcatagataaagtacaagatagctaatgcaaaagtaaagattcatacatgtatt |
7770152 |
T |
|
| Q |
111 |
ggataattgactatgagttgtgatggtctcccacca |
146 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
7770153 |
ggataactgactatgtgttttgatggtctcccacca |
7770188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 13017832 - 13018011
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||| |||| ||| ||| ||||| ||| || || |||||||| |
|
|
| T |
13017832 |
ttcccataggattacatcagattcatctcaggaattaaccacaaaagaattagttactcatagctaacgtataagctaactaacacaagaaaaaggattc |
13017931 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt |
179 |
Q |
| |
|
|||||||| |||| ||||||| | |||| ||||||| ||| |||| |||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
13017932 |
atacatgtgaaggatgattgactcttagttttgatggtttccaaccagatct-ccaagtctctgctccaaaatatgccttt |
13018011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 22221324 - 22221182
Alignment:
| Q |
4 |
ccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcata |
102 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||||||||||| |||||||||||||| | |||||| ||| ||||| |||||| || ||||||||||| |
|
|
| T |
22221324 |
ccataggattacatcagattcatctcaggaattaaccacaaaagaattagttactcatagcgaaagtataagctaactaacataagaaaaaggattcata |
22221225 |
T |
|
| Q |
103 |
catgtactggataattgactatgagttgtgatggtctcccacc |
145 |
Q |
| |
|
||||| | || ||||||| | |||| ||||||| ||||||| |
|
|
| T |
22221224 |
catgtgaagaatgattgactcttagttttgatggtttcccacc |
22221182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 22247159 - 22247017
Alignment:
| Q |
4 |
ccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcata |
102 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||||||||||| |||||||||||||| | |||||| ||| ||||| |||||| || ||||||||||| |
|
|
| T |
22247159 |
ccataggattacatcagattcatctcaggaattaaccacaaaagaattagttactcatagcgaaagtataagctaactaacataagaaaaaggattcata |
22247060 |
T |
|
| Q |
103 |
catgtactggataattgactatgagttgtgatggtctcccacc |
145 |
Q |
| |
|
||||| | || ||||||| | |||| ||||||| ||||||| |
|
|
| T |
22247059 |
catgtgaagaatgattgactcttagttttgatggtttcccacc |
22247017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0665 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 287 - 487
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
287 |
ttcccataggattacatcagattcatctcaagcttaaccatgaagagattagttactcataactacagtacaagataactcacataaaatcaaggattca |
386 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
387 |
tacatgtattggataattgactatgagttgtgatggtctcccaccaaatcttcaaagcctccgctccaaatatgccttttctctct-aaaatcgtgaacc |
485 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
486 |
ct |
487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 204
Target Start/End: Original strand, 14617075 - 14617273
Alignment:
| Q |
5 |
cataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcataca |
104 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14617075 |
cataggattacatcatattcatctcaagcttaaccagaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcataca |
14617174 |
T |
|
| Q |
105 |
tgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaaccctta |
204 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14617175 |
tgtattggataattgactatgagttgtgatggtctcccaccaaatctacaaagcccccgctcgtaatatgccttttctctct-aaaatcgtgaaccctta |
14617273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 34405451 - 34405251
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
34405451 |
ttcccataggattacatcagattcatctcaagctgaaccataaagagattagttactcataactacagtacaagataactcacataaaatcaaggattca |
34405352 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34405351 |
tatatgtattggataattgactatgagttgtgatggtctcccaccaaatcttcaaagcctccgctccaaatatgccttttctctct-aaaatcgtgaacc |
34405253 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
34405252 |
ct |
34405251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 22159346 - 22159134
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||| |||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22159346 |
ttcccgtaggattacatcggattcatctcattctcaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
22159247 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
22159246 |
tacatgtattggatgattgactatgagttgtgatgctctcccaccaaatctacaaagcctctactccaaatatctcttttctctct-aaaatcgtgaacc |
22159148 |
T |
|
| Q |
201 |
cttaatctgaaaac |
214 |
Q |
| |
|
|||| | ||||||| |
|
|
| T |
22159147 |
cttactttgaaaac |
22159134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 26712993 - 26713163
Alignment:
| Q |
7 |
taggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcatacat |
105 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || |||||||||||||| |
|
|
| T |
26712993 |
taggattacatcagatttatctcaggaattaaccacaaa---attagttactcatagctaaagtataagctaactaacataagaaaaaggattcatacat |
26713089 |
T |
|
| Q |
106 |
gtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt |
179 |
Q |
| |
|
||| |||| ||||||| | |||| ||||||| |||||||| |||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
26713090 |
gtaaaggatgattgactcttagttttgatggtttcccaccagatct-ccaagtctctgctccaaaatatgccttt |
26713163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 26982731 - 26982901
Alignment:
| Q |
7 |
taggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcatacat |
105 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || |||||||||||||| |
|
|
| T |
26982731 |
taggattacatcagatttatctcaggaattaaccacaaa---attagttactcatagctaaagtataagctaactaacataagaaaaaggattcatacat |
26982827 |
T |
|
| Q |
106 |
gtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt |
179 |
Q |
| |
|
||| |||| ||||||| | |||| ||||||| |||||||| |||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
26982828 |
gtaaaggatgattgactcttagttttgatggtttcccaccagatct-ccaagtctctgctccaaaatatgccttt |
26982901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 33574691 - 33574521
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
|||||||||| |||||||||||| |||||| | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || |||||||| |
|
|
| T |
33574691 |
ttcccatagggttacatcagattcatctcaggaattaaccacaaaagaattagttactcatagctaaagtataagctaactaacataagaaaaaggattc |
33574592 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaat |
171 |
Q |
| |
|
|||||||| |||| ||||||| | |||| ||||||| |||||||| |||| ||||| ||| ||||||||| |
|
|
| T |
33574591 |
atacatgtgaaggatgattgactcttagttttgatggtttcccaccagatct-ccaagtctctgctccaaat |
33574521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 15543025 - 15543204
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
|||||||||| |||||||||||| |||||| | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || | |||||| |
|
|
| T |
15543025 |
ttcccatagggttacatcagattcatctcatgaattaaccacaaaagaattagttactcatagctaaagtataagctaactaacataagaaaacggattc |
15543124 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt |
179 |
Q |
| |
|
|||||||| ||| ||||||| | |||| ||||||| ||||||| |||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
15543125 |
atacatgtgaaggaagattgactcttagttttgatggttccccaccagatct-ccaagtctctgctccaaaatatgccttt |
15543204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 15532843 - 15533022
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
|||||||||| |||||||||||| |||||| | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || | |||||| |
|
|
| T |
15532843 |
ttcccatagggttacatcagattcatctcatgaattaaccacaaaagaattagttactcatagctaaagtataagctaactaacataagaaaacggattc |
15532942 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt |
179 |
Q |
| |
|
|| ||||| ||| ||||||| | |||| ||||||| ||||||| |||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
15532943 |
atccatgtgaaggaagattgactcttagttttgatggttccccaccagatct-ccaagtctctgctccaaaatatgccttt |
15533022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 647846 - 648046
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
647846 |
ttcccataggattacatcagattcatctcaagcttaaccataaagagattagttactcataactacagtacaagataactcacataaaatcaaggattca |
647945 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
647946 |
tatatgtattggataattgactatgagttgtgatggtctcccaccaaatcttcaaagcctccgctccaaatatgtcttttctctct-aaaatcgtgaacc |
648044 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
648045 |
ct |
648046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 651119 - 651319
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
651119 |
ttcccataggattacatcagattcatctcaagcttaaccataaagagattagttactcataactacagtacaagataactcacataaaatcaaggattca |
651218 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
651219 |
tatatgtatgggataattgactatgagttgtgatggtctcccaccaaatcttcaaagcctccgctccaaatatgtcttttctctct-aaaatcgtgaacc |
651317 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
651318 |
ct |
651319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 26063336 - 26063549
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26063336 |
ttcccatatgattacattagattcatctcagtctcaaccacaaagaaattagttactcatatctaaagtacaagataactcacataaaaacaaggattca |
26063435 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaatatgccttttctctctaaaaatcgtgaacc |
200 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||| ||||||||||||||||| ||| ||| |||| ||| |||||||||| ||||||||||||| |
|
|
| T |
26063436 |
tacatgtattggatgattgactatgggttgtgatgatctcccaccaaatctacaaagtctctaggccaattatctattttctctct-aaaatcgtgaacc |
26063534 |
T |
|
| Q |
201 |
cttaatctgaaaacg |
215 |
Q |
| |
|
|||| | |||||||| |
|
|
| T |
26063535 |
cttactttgaaaacg |
26063549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 12171585 - 12171369
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctca-agcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
|||| ||||| |||||||||||| |||||| | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || |||||||| |
|
|
| T |
12171585 |
ttccaatagggttacatcagattcatctcagaaattaaccacaaaagaattagttactcatagctaaagtagaagctaactaacataagaaaaaggattc |
12171486 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt-tctctctaaaaatcgtga |
197 |
Q |
| |
|
|||||||| |||| ||| ||| | |||| ||||||| |||||||| |||| ||||| ||| ||||| |||||||||||| |||| |||| |||||| |
|
|
| T |
12171485 |
atacatgtgacggatgatttactcttagttttgatggtttcccaccagatct-ccaagtctctgctccaaaatatgcctttaggtctc-aaaattcgtga |
12171388 |
T |
|
| Q |
198 |
acccttaatctgaaaacgc |
216 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
12171387 |
acccctaatctgaaaacgc |
12171369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 36326527 - 36326311
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaag----ga |
96 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||| || |
|
|
| T |
36326527 |
ttcccataggattacatcagattcatctcaagcttaaccacaaaagaattagttactcatagataaagtacaagataactaacgtaaaaacaaggattga |
36326428 |
T |
|
| Q |
97 |
ttcatacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaa-atatgccttttctctctaaaaatcgt |
195 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||| ||||||| ||| || |||| | || |||| ||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
36326427 |
ttcatacgtgtattggatgattgactatgagttttgatggttggccatcagatctccaaatcctctgctccaatatatgtcttttctctct-aaaatcgt |
36326329 |
T |
|
| Q |
196 |
gaacccttaatctgaaaa |
213 |
Q |
| |
|
||||||||| | |||||| |
|
|
| T |
36326328 |
gaacccttactttgaaaa |
36326311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 32576328 - 32576518
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
|||| |||||||||||||| ||| |||| | || |||||||||||||||||||| | ||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
32576328 |
ttcctataggattacatcatattcatctaagtctcaaccacaaagagattagttattgatagctaaagtagaagataactaacataaaaacaaggattca |
32576427 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttttctctctaaaa |
190 |
Q |
| |
|
|||| ||| ||||| | ||||| |||||| |||||||||||||| | |||| | |||||||| |||| ||||| ||| ||||||||||||| |
|
|
| T |
32576428 |
tacaagtattggatgactgactgtgagttttgatggtctcccactagatctgcaaagcctccactccaaaatacgccctttctctctaaaa |
32576518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 40017580 - 40017444
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| ||||| || ||||||||| |
|
|
| T |
40017580 |
ttcccataggattacatcatattcatctcaagcttaaccacaaaagaattagttactcatagttaaagtataagctaactaacataggaagaaggattca |
40017481 |
T |
|
| Q |
101 |
tacatgtactggataattgactatgagttgtgatggt |
137 |
Q |
| |
|
|||||||| ||||| | |||||||||||| ||||||| |
|
|
| T |
40017480 |
tacatgtaatggatgactgactatgagttttgatggt |
40017444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 13709670 - 13709505
Alignment:
| Q |
5 |
cataggattacatcagatttatctcaagcttaaccacaaagaga-ttagttactcataactaaagtacaagataactcacataaaaacaaggattcatac |
103 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| |||| ||||||||||||| |||||||| ||| ||||| |||||| || |||||||||||| |
|
|
| T |
13709670 |
cataggattacatcagattcatctcagaattaaccacaa-gagaattagttactcatagctaaagtataagctaactaacataagaataaggattcatac |
13709572 |
T |
|
| Q |
104 |
atgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaa |
170 |
Q |
| |
|
||||| ||||| ||||||||| |||| ||||||| ||||||| |||| | | ||||| |||||||| |
|
|
| T |
13709571 |
atgtaatggatgattgactattagttttgatggttgcccaccagatctgcaacgcctctgctccaaa |
13709505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 31527992 - 31527813
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || | |||||| |
|
|
| T |
31527992 |
ttcccataggattacatcagattcatctcaggaattaaccacaaaagaattagttactcatagctaaagtataagctaactaacataagaaaacggattc |
31527893 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt |
179 |
Q |
| |
|
|||||||| ||| ||||||| | |||| ||||||| ||||||| |||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
31527892 |
atacatgtgaaggaagattgactcttagttttgatggttccccaccagatct-ccaagtctctgctccaaaatatgccttt |
31527813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 31626150 - 31625936
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||||||| || || ||||| |
|
|
| T |
31626150 |
ttcccgtaggattacatcagattcatctcaagaattaaccacaaaagaattagttactcatagctaaagtataagctaactcacataagaaaaatgattc |
31626051 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt-tctctctaaaaatcgtga |
197 |
Q |
| |
|
|||||||| |||| ||||||| |||| ||||||| ||||||| |||| ||||| || ||||| ||||||| |||| |||| |||| |||||| |
|
|
| T |
31626050 |
gtacatgtaaaggatgattgactcatagttttgatggttgcccaccagatct-ccaagtatctgctccaaaatatgtctttaggtctc-aaaattcgtga |
31625953 |
T |
|
| Q |
198 |
acccttaatctgaaaac |
214 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
31625952 |
acccttaatcagaaaac |
31625936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 8426560 - 8426447
Alignment:
| Q |
36 |
aaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcatacatgtactggataattgactatgagttgtgatg |
135 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |||||| | ||| ||| |||||| ||||||| |||| | |||||||||||| ||||| |
|
|
| T |
8426560 |
aaccacaaggagattagttactcatagctaaagtacaa-ataactaatgcgaaaccaa-gattcacacatgtaatggaggactgactatgagttttgatg |
8426463 |
T |
|
| Q |
136 |
gtctcccaccaaatct |
151 |
Q |
| |
|
| ||||||||| |||| |
|
|
| T |
8426462 |
gcctcccaccagatct |
8426447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 1096863 - 1097009
Alignment:
| Q |
5 |
cataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcataca |
104 |
Q |
| |
|
||||| |||| |||||||| || |||||||||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || ||||||||||||| |
|
|
| T |
1096863 |
catagaattatatcagattcatgtcaagcttaaccacaaaggaattagttactcatagctaaagtataagttaactaacataagaaaaaggattcataca |
1096962 |
T |
|
| Q |
105 |
tgtactggataattgactatgagttgtgatggtctcccaccaaatct |
151 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||||||| |||| |
|
|
| T |
1096963 |
tgtaatggatgattgactatgagttgtgatggttgcccaccagatct |
1097009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 31878317 - 31878463
Alignment:
| Q |
5 |
cataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcataca |
104 |
Q |
| |
|
|||| ||||| |||||||| |||| | || ||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
31878317 |
cataagattatatcagattcatctaagtctcaaccataaagagattagttactcatagctaaagtacaaaataactaacataaaaacaaggattcataca |
31878416 |
T |
|
| Q |
105 |
tgtactggataattgactatgagttgtgatggtctcccaccaaatct |
151 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
31878417 |
tgtattggatgattgactatgagttttgatggttgcccaccagatct |
31878463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11139211 - 11139428
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaag-cttaaccacaaagagattagttactcataactaaagtacaagataactcacataa-aaacaaggatt |
98 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| | |||||||| ||||||||| |||||| ||| ||||||| |
|
|
| T |
11139211 |
ttcccataggattacatcagattcatctcaagaattaaccacaaaagaattagttactcaaagctaaagtataagataactaacataagaaaaaaggatt |
11139310 |
T |
|
| Q |
99 |
catacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt-tctctctaaaaatcgtg |
196 |
Q |
| |
|
||||||||| |||| ||||||| | |||| ||||||| |||||||| |||| ||||| ||| ||||| |||||||||||| |||| |||| |||| |
|
|
| T |
11139311 |
catacatgtgaaggatgattgactcttagttttgatggtttcccaccagatct-ccaagtctctgctccaaaatatgcctttaggtctc-aaaattcgtc |
11139408 |
T |
|
| Q |
197 |
aacccttaatctgaaaacgc |
216 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
11139409 |
aacccttcatctgaaaacgc |
11139428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 22626955 - 22627171
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || |||||||| |
|
|
| T |
22626955 |
ttcccataggattacatcagattcatctcaggaattaaccacaaaagaattagttactcatagctaaagtataagctaactaacataagaaaaaggattc |
22627054 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt-tctctctaaaaatcgtga |
197 |
Q |
| |
|
|||||||| |||| ||||||| | |||| ||||||| |||||||| |||| ||||| ||| ||||| |||||||||||| |||| |||| |||| | |
|
|
| T |
22627055 |
atacatgtgaaggatgattgactcttagttttgatggtttcccaccagatct-ccaagtctctgctccaaaatatgcctttaggtctc-aaaattcgtca |
22627152 |
T |
|
| Q |
198 |
acccttaatctgaaaacgc |
216 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
22627153 |
acccttcatctgaaaacgc |
22627171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 39564157 - 39564327
Alignment:
| Q |
7 |
taggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcatacat |
105 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || |||||||||||||| |
|
|
| T |
39564157 |
taggattacatcagatttatctcaggaattaaccacaaa---attagttactcatagctaaagtataagctaactaacataagaaaaaggattcatacat |
39564253 |
T |
|
| Q |
106 |
gtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt |
179 |
Q |
| |
|
||| |||| ||||||| | |||| ||||||| |||||||| |||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
39564254 |
gtaaaggatgattgactcttagttttgatggtttcccaccatatct-ccaagtctctgctccaaaatatgccttt |
39564327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 35365943 - 35365792
Alignment:
| Q |
40 |
acaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcatacatgtactggataattgactatgagttgtgatggtct |
139 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||| | |||| || |||||||||||||| || |||| |||||||||||| |||||||| |
|
|
| T |
35365943 |
acaaggagattagttactcatagctaaagtacaagataactaatgcaaaagtaaagattcatacatgtattgaataactgactatgagttttgatggtcg |
35365844 |
T |
|
| Q |
140 |
cccaccaaatctaccaagcctccgctcc-aaatatgccttttctctctaaaa |
190 |
Q |
| |
|
||||||| |||| || || ||||| ||||||||||||||||||||||| |
|
|
| T |
35365843 |
cccaccagatctttagtgcttcagctccaaaatatgccttttctctctaaaa |
35365792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 47411686 - 47411619
Alignment:
| Q |
120 |
actatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttttctctct |
186 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| | |||| || ||||| ||||||||||||||||||| |
|
|
| T |
47411686 |
actatgagttttgatggtctcccaccatatctgcaaagcttcagctccaaaatatgccttttctctct |
47411619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 12575942 - 12576060
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattca |
100 |
Q |
| |
|
|||| |||||||||||||||||| |||| | || ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
12575942 |
ttcctataggattacatcagattcatctaagtctcaaccacaaagagattagttactcatcgctaaagtacaagataactaacataaaaacaatgattca |
12576041 |
T |
|
| Q |
101 |
tacatgtactggataattg |
119 |
Q |
| |
|
|||||||| ||||| |||| |
|
|
| T |
12576042 |
tacatgtattggatgattg |
12576060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 7635 - 7804
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
||||| ||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||| ||| ||||| |||||| || |||||||| |
|
|
| T |
7635 |
ttcccgtaggattacatcagattcatctcaggaattaaccacaaaagaattagttactcataactaaagtataagctaactaacataagaaaaaggattc |
7734 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctccaaa |
170 |
Q |
| |
|
||||||||| |||| ||||||| | |||| ||||||| ||||||| |||| ||||| ||| |||||||| |
|
|
| T |
7735 |
atacatgtagaggatgattgactcttagttttgatggtttcccaccggatct-ccaagtctctgctccaaa |
7804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0500 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0500
Description:
Target: scaffold0500; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 2294 - 2115
Alignment:
| Q |
1 |
ttcccataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattc |
99 |
Q |
| |
|
||||| ||||||||||||||||| |||| | | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| | |||||||| |
|
|
| T |
2294 |
ttcccgtaggattacatcagattcatcttaggaattaaccacaaaagaattagttactcatagctaaagtataagttaactaacataagagaaaggattc |
2195 |
T |
|
| Q |
100 |
atacatgtactggataattgactatgagttgtgatggtctcccaccaaatctaccaagcctccgctcc-aaatatgccttt |
179 |
Q |
| |
|
||||||||| |||| ||||||| | |||| ||||||| |||||||| ||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
2194 |
atacatgtaaaggatgattgactcttagttttgatggtttcccaccagatc-cccaagtctctgctccaaaatatgccttt |
2115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0440 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 9608 - 9468
Alignment:
| Q |
5 |
cataggattacatcagatttatctcaagc-ttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcatac |
103 |
Q |
| |
|
||||||||||||||||||| |||||| | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || |||||||||||| |
|
|
| T |
9608 |
cataggattacatcagattcatctcaggaattaaccacaaaagaattagttactcatagctaaagtataagctaactaacataagaaaaaggattcatac |
9509 |
T |
|
| Q |
104 |
atgtactggataattgactatgagttgtgatggtctcccac |
144 |
Q |
| |
|
|||| |||| ||||||| | |||| ||||||| |||||| |
|
|
| T |
9508 |
atgtgaaggatgattgactcttagttttgatggtttcccac |
9468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 3253 - 3400
Alignment:
| Q |
4 |
ccataggattacatcagatttatctcaagcttaaccacaaagagattagttactcataactaaagtacaagataactcacataaaaacaaggattcatac |
103 |
Q |
| |
|
||||| |||||||| ||||| |||||| | |||||||||| |||||||||||||| |||||||| ||| ||||| |||||| || |||||||||||| |
|
|
| T |
3253 |
ccataagattacataagattcatctcaggaataaccacaaaagaattagttactcatagctaaagtataagctaactaacataagaagaaggattcatac |
3352 |
T |
|
| Q |
104 |
atgtactggataattgactatgagttgtgatggtctcccaccaaatct |
151 |
Q |
| |
|
||||| |||| ||||||| | |||| ||||||| ||||||| |||| |
|
|
| T |
3353 |
atgtaaaggatgattgactcttagttttgatggttgcccaccagatct |
3400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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