View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_low_4 (Length: 460)
Name: NF14943_low_4
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 6 - 324
Target Start/End: Complemental strand, 4775272 - 4774954
Alignment:
| Q |
6 |
aatacttgacaacttagtcgatagcatgaaaataaattgttaagtgaaaagtaacctagtgtattgcatcaaatttggtcgcctttgtaatatatatttt |
105 |
Q |
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| T |
4775272 |
aatacttgacaatttagtcgataacatgaaaataaattgttaagtgaaaagtaacctagtgtattgcatcaaatttggtcgcttttgtaatatatatttt |
4775173 |
T |
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| Q |
106 |
gataattcaattacatataaataattagttaagtgggaattcccctaaacaatatcacatcatcaacatggttgtcactttagtcaaattcgaacattga |
205 |
Q |
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| T |
4775172 |
gataattcaattacatataaataattagttaagtgggaattcccctaaacaatatcacatcatcaacatggttgtcacttgagtcaaatttgaacatcga |
4775073 |
T |
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| Q |
206 |
taatgttattgattctttattagctttatacatagaacatctcaagtactcatttaccatatttgtcaatcgatattagttctaatgaaattttttctct |
305 |
Q |
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| T |
4775072 |
taatgttattgattctttattagctttatatatacaacatctcaagtactcatttaccatatttgtcaatcgatattagttctaatgaaattttttctct |
4774973 |
T |
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| Q |
306 |
accttgctctcaagcttga |
324 |
Q |
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| T |
4774972 |
accttgctctcaagcttga |
4774954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 383 - 443
Target Start/End: Complemental strand, 4774921 - 4774861
Alignment:
| Q |
383 |
ttgtggaatatgggattccttgtaactgccattaccctcaaagttttttacatgtcatcct |
443 |
Q |
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| T |
4774921 |
ttgtggaatatgggattccttgtaactgccattaccctcaaagttttttacatgtcatcct |
4774861 |
T |
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