View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_low_5 (Length: 446)
Name: NF14943_low_5
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 4539563 - 4539992
Alignment:
| Q |
1 |
taacgttcggcctaacaattttcacatttatatcggttaaattaggatttatgtaactcaaattttaatggcacaatgcataacaacaaactcatctatg |
100 |
Q |
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| T |
4539563 |
taacgttcggtctaacaattttgacgtttgtattagttaaattaggatttatgaaactcaaattttaatggcacaatgcataacaacaaactcatctatg |
4539662 |
T |
|
| Q |
101 |
gaatcgaaccaaaaatatnnnnnnnnnttaaaataagagaaaagaatattatatagaatacatatctgttgaaaataatggagtataaattactcctgaa |
200 |
Q |
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| T |
4539663 |
gaatcgaaccaaaaatataaaaaaaaattaaaataagagaaaataatattatatagaatacatatctgttgaaaataatggagtataaattactcctgaa |
4539762 |
T |
|
| Q |
201 |
attgtcatgcnnnnnnnnnnnnnnnnnnnctaaaactaaacgttacattacatagccagaaacaaaagaaatggacctgtcaatctcatcattaaaaaac |
300 |
Q |
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| T |
4539763 |
attgtcatgctttttgcctttttctttttctaaaactaaacgttacattacatagccagaaacaaaagaaatggacctgtcaatctcatcattaaaaaac |
4539862 |
T |
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| Q |
301 |
attgttatcgtttgttctgctgtcattataagctcaagctgtatgtatagcctcatttgctcaattctccaaatatccaaccaacactaaactgacccca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4539863 |
attgttatcgtttgttctgctgtcattataagctcaagctgtatgtatagcctcatttgctcaattctccaaatatccaaccaacactaaactgacccca |
4539962 |
T |
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| Q |
401 |
tctattgtattatttgtcggtcgtgatttc |
430 |
Q |
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| T |
4539963 |
tctattgtattatttgtcggtcgtgatttc |
4539992 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 40597511 - 40597463
Alignment:
| Q |
5 |
gttcggcctaacaattttcacatttatatcggttaaattaggatttatg |
53 |
Q |
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| T |
40597511 |
gttcggcctaacaatttcaacatttttatcagttgaattaggatttatg |
40597463 |
T |
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