View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14943_low_7 (Length: 426)
Name: NF14943_low_7
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 393
Target Start/End: Original strand, 2258664 - 2259048
Alignment:
| Q |
7 |
aatatttgatcatccctacacaaagaaaattaaatattaatcaatttcataccttaatttaatatttgatcattaatatattcattcaaattgatgtact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2258664 |
aatatttgatcatccctacacaaagaaaattaaatattaatcaatttcataccttaatttaatatttgatcattaatatattcattcaaattgatgtact |
2258763 |
T |
|
| Q |
107 |
ccatgnnnnnnnnnnnnnnnnngtctttaatttggaaattttatattagggtgaaattataggtaatgaaaatatgcataaacttaaatataaactaaag |
206 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2258764 |
ccatgtatatttatatatat--gtctttaatttggaaattttatattagggtgaaattataggtaatgaaaatatgcataaacttaaatataaactaaag |
2258861 |
T |
|
| Q |
207 |
ctatgtttggatacgagttttccaagacaatatcgcgtctaaatgcaccttcaccgctaaaagcatgaagctattatatacagcttatgtgttaccgtga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2258862 |
ctatgtttggatacgagttttccaagacaatatcgcgtctaaatacaccttcaccgctaaaagcatgaagctattatatacagcttatgtgttaccgtga |
2258961 |
T |
|
| Q |
307 |
ttttaaacgtgagtttgggtaaaagagatgtcaatccaaacagacattaagtattaattatggtgtcgagtgtaacaaaaataaaag |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2258962 |
ttttaaacgtgagtttgggtaaaagagatgtcaatccaaacagacactaagtattaattatggtgtcgaatgtaacaaaaataaaag |
2259048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 348
Target Start/End: Complemental strand, 32299917 - 32299780
Alignment:
| Q |
211 |
gtttggatacgagttttccaagacaatatcgcgtctaaatgcaccttcaccgctaaaagcatgaagctattatatacagcttatgtgttaccgtgatttt |
310 |
Q |
| |
|
||||||||||| ||||||| || || |||||| |||||||||||||||||||||||||||||||| |||||| ||| | |||| |||| ||| |
|
|
| T |
32299917 |
gtttggatacgcattttccagtgcattaccgcgtcccaatgcaccttcaccgctaaaagcatgaagctaccttatacaacttctacattactgtgacttt |
32299818 |
T |
|
| Q |
311 |
aaacgtgagtttgggtaaaagagatgtcaatccaaaca |
348 |
Q |
| |
|
|||| ||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
32299817 |
aaacatgagtttggataaaaaagacgtcaatccaaaca |
32299780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 36656155 - 36656049
Alignment:
| Q |
252 |
caccttcaccgct-aaaagcatgaagctattatatacagcttatgtgttaccgtgattttaaacgtgagtttgggtaaaagagatgtcaatccaaacaga |
350 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||||||| ||| ||||||| |||| |||||| |||||||||| |||||| ||||||||| |||||| | |
|
|
| T |
36656155 |
caccttcaccgcacaaaagaatgatgctattatatacgacttcagtgttactgtgactttaaatgtgagtttggataaaagggatgtcaattcaaacata |
36656056 |
T |
|
| Q |
351 |
cattaag |
357 |
Q |
| |
|
|| |||| |
|
|
| T |
36656055 |
cactaag |
36656049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 348
Target Start/End: Complemental strand, 36913328 - 36913237
Alignment:
| Q |
257 |
tcaccgctaaaagcatgaagctattatatacagcttatgtgttaccgtgattttaaacgtgagtttgggtaaaagagatgtcaatccaaaca |
348 |
Q |
| |
|
|||||||||||| | ||||||| |||| ||||||| || ||| ||||||||| || ||||| |||||||||| |||| | ||||| ||||| |
|
|
| T |
36913328 |
tcaccgctaaaaactagaagctactatacacagcttctgcgttgccgtgatttcaatcgtgattttgggtaaatgagacgccaatctaaaca |
36913237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University