View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14943_low_9 (Length: 403)
Name: NF14943_low_9
Description: NF14943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14943_low_9 |
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| [»] scaffold0178 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 64 - 386
Target Start/End: Original strand, 40623166 - 40623497
Alignment:
| Q |
64 |
attcaaagctcactacatatgctttcaactatcactatttagatgttattgaatttagacagattatcatcacttgcaaaagaaatttcaacccttactt |
163 |
Q |
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| T |
40623166 |
attcaaagctcactacatatgctttcaactatcactatttaaatgttattgaatttagacagattatcatcacttgcaaaagaaatttcaacccttactt |
40623265 |
T |
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| Q |
164 |
cacaaactcaaatgtcgagtttaataggcgacaaataaatgatgtagatcataccctcgttgagattgtcacattaatgtacctcgtt------atattg |
257 |
Q |
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| T |
40623266 |
cacaaactcaaatgcctagtttaataggcgacaaacaaatgatgtagattacatccttgttgaggttgtcacattaatgtacctcgttatattgatattg |
40623365 |
T |
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| Q |
258 |
accattttattattaatgaattgttataagtatatttattt---tttnnnnnnncaaatactcttgcttattggttaagctccccattgaaaatgatctt |
354 |
Q |
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| T |
40623366 |
accattttattattaatgaattgttataagcatatttatttaaaaaaaaaaaaacaaatactcttgcttattgggtaagctccccattgaaaatgatttt |
40623465 |
T |
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| Q |
355 |
aattcttaaaattctaattccagaacttaaat |
386 |
Q |
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| T |
40623466 |
aattcttaaaattctaattctagaacttaaat |
40623497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 11213 - 11346
Alignment:
| Q |
106 |
atgttattgaatttagacagattatcatcacttgcaaaagaaatttcaacccttacttcacaaactcaaatgtcgagtttaataggcgacaaataaatga |
205 |
Q |
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| T |
11213 |
atgttattgaatttggacaaattatcatcgcttgcataagacttttcagctcttacttcacaaactcaaaggtcgagtttaatcggcgataaacaaatga |
11312 |
T |
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| Q |
206 |
tgtagatcataccctcgttgagattgtcacatta |
239 |
Q |
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| T |
11313 |
ggtagctcacaccctcgacgaaattgccacatta |
11346 |
T |
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