View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14944_high_12 (Length: 432)
Name: NF14944_high_12
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 15 - 417
Target Start/End: Complemental strand, 50401178 - 50400776
Alignment:
| Q |
15 |
atgaactcaattccctctcctccaccttcttcatctccaagttctacaattctcactcaatccaaaaaccctaactatctcttcaaattcaacctcaaag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50401178 |
atgaactcaattccctctcctccaccttcttcatctccaagttctacaattctcactcaatccaaaaaccctaactatctcttcaaattcaacctcaaag |
50401079 |
T |
|
| Q |
115 |
ttcccattttacccttccattcttcatcttcccacctcactgcacatgcaccgtgttgcactctcagggactcaacttcagtgttagacaaaaatgcccc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
50401078 |
ttcccattttacccttccattcttcatcttcccacctcactgcacatgcaccgtgttgcactctcagggactcaaattcagtgttggagaaaaatgcccc |
50400979 |
T |
|
| Q |
215 |
ttcctccgagcagagtagccgaaattacattccaccgaaagactcaaactttgatggaacgcttgtggttcgccggccggagttttccggtgaaaactcc |
314 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50400978 |
ttcctccgagcagagtacccgaaattacattccaccgaaagactcaaactttgatggaacgcttgtggttcgccggccggagttttccggtgaaaactcc |
50400879 |
T |
|
| Q |
315 |
ggtgaggaggtgaaaaaggagaaggaaattgtgaaagaggaagctaaagcttcttcaattgatgttgggttaacgacatttgcgaagaagatgccgatat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50400878 |
ggtgaggaggtgaaaaaggagaaggaaattgtgaaagaggaagctaaagcttcttcaattgatgttgggttaacgacatttgcgaagaagatgccgatat |
50400779 |
T |
|
| Q |
415 |
ttg |
417 |
Q |
| |
|
||| |
|
|
| T |
50400778 |
ttg |
50400776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University