View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_high_14 (Length: 412)
Name: NF14944_high_14
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Original strand, 1841423 - 1841806
Alignment:
| Q |
11 |
ttattcttataattaggtgtagctggtatcatagttgaattatcaaaagacaaaatatatgtctttggagaagaacttctccgaggaacctttttcgatt |
110 |
Q |
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| T |
1841423 |
ttattcttataattaggtgtagctggtatcatagttgaattatcaaaagacaaaatatatgtctttggagaagaacttctccgaggaacctttttcgatt |
1841522 |
T |
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| Q |
111 |
tcaaaccttgttcttgttcttgttcttgtggttgatgttgttgagacacgattgagtttgaactgttacttttgatcatgttcccaacaacctcaacacc |
210 |
Q |
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| T |
1841523 |
tcaaaccatgttcttgttcttgttcttgtggttgatgttgttgagacacgattgagtttgaactgttacttttgatcatgttcccaacaaactcaacacc |
1841622 |
T |
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| Q |
211 |
accgttaacgttaacagtaacagaattgttttcactttctgaatacattaaactttgtggtggtgtttgtaacaaaatatcttgaagaaaatcgtcccct |
310 |
Q |
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| T |
1841623 |
accgttaacgttaacagtaacagaattgttttcactttctgaatacattaaactttgtggtggtgtttgtaacaaaatatcttgaagaaaatcgtcccct |
1841722 |
T |
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| Q |
311 |
atgaaataatcatcaccacaatccaattcctacaacaattcattaatttatttttatcatgaattatatatagtaacaaataaat |
395 |
Q |
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| T |
1841723 |
atgaaataatcatcaccacaatccaattcctacaacaattcattaattt-tttttatcatgaattatatatagtaacaaataaat |
1841806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 1824138 - 1824345
Alignment:
| Q |
26 |
ggtgtagctggtatcatagttgaattatcaaaagacaaaatatatgtctttggagaagaacttctccgaggaacctttttcgatttcaaaccttgttctt |
125 |
Q |
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| T |
1824138 |
ggtgtagctggtatcatagttgaattatcaaaagacaaaatatatgtctttggagaagaacttttacgaggaacctttttcgatttcaaaccatgttgtt |
1824237 |
T |
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| Q |
126 |
gttcttgttcttgtggttgatgttgttgagacacgattgagtttgaactgttacttttgatcatgttcccaacaacctcaacaccaccgttaacgttaac |
225 |
Q |
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| T |
1824238 |
gttcttgttcttgtggttgatgttgttgagacacaattgagtttgaactcttactcttaaccgtgttcccaacaacctcaacaccaccgttaacattaac |
1824337 |
T |
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| Q |
226 |
agtaacag |
233 |
Q |
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| T |
1824338 |
ggtaacag |
1824345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 1824466 - 1824521
Alignment:
| Q |
309 |
ctatgaaataatcatcaccacaatccaattcctacaacaattcattaatttatttt |
364 |
Q |
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| T |
1824466 |
ctatgaaataatcatcaccacaatccaattcctacaacaattaattcatttttttt |
1824521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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