View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_high_15 (Length: 392)
Name: NF14944_high_15
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 19604051 - 19603714
Alignment:
| Q |
7 |
tcgaagaatatgaactttaaagaaaatatttgtactatcagtcatctcaaatacacaagtgtcaccaactttgaaattatattcgtcaacaatttgtccc |
106 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19604051 |
tcgaacaatatgaactttaaagaaaatatttgtactatcagtcatctcaaatacacaagtgtcaccaactttgaaattatactcgtcaacaatttgtccc |
19603952 |
T |
|
| Q |
107 |
caaccagaagttatgagtgctcgattagttgtatcattgaacttgaagtttaagcgccaagtcttatcctcatcaccaaacaacacggttgcaatcccat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19603951 |
caaccagaagttatgagtgctcgattagttgtatcattgaacttgaagtttaagcgccaagtcttatcctcatcaccaaacaacacggttgcaatcccat |
19603852 |
T |
|
| Q |
207 |
tctttccattcaaatactctttcgaaaacgatgttggtataaact-gatccaattatcatttaaacacaag-aaaaatatttatataggaaaacatttct |
304 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| | |||||||||||||||||||||||||||| |
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| T |
19603851 |
tcttgccattcaaatactctttcgaaaacgatgttggtataaactggatccaatcatcatttaagcacatgaaaaaatatttatataggaaaacatttct |
19603752 |
T |
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| Q |
305 |
agattgttaaactatatagtaaaatgtggaaattgatt |
342 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
19603751 |
agattgataaactatatagtaaaatgtggaaattgatt |
19603714 |
T |
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