View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_high_2 (Length: 581)
Name: NF14944_high_2
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 27399822 - 27399241
Alignment:
| Q |
1 |
agattctaaattgatctttctccaattaatcttattcacagaacatgaagagtctattcaaggaatgcgacgtacaaattatctggtttcatatacattg |
100 |
Q |
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| T |
27399822 |
agattctaaattgatctttctccaattaatcttattcacagaacatgaagagtctattcaaggaatgcgacgtacaaattatctggtttcatatacattc |
27399723 |
T |
|
| Q |
101 |
ttatatattacaaatttttaatgtcctacaaacttaagaacctcacattacaattatccttttgttttt-----------------atctctcttacttg |
183 |
Q |
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| T |
27399722 |
ttatatattacaaatttttaatgtcctacaaacttaagaacctcacattacaactatccttttgttttttttttacctttgtttttatctctcttatttg |
27399623 |
T |
|
| Q |
184 |
agttactggatttattatccttacaggatcactttctgttctgagcttggaaattaaaacatgttacagtagggtaaaattaaatagtggtgtgtatgca |
283 |
Q |
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| T |
27399622 |
agttactggatttattatccttacaggatcactttctgttctgagcttggaaattaaaacatgttacagtagggtaacattaaatagtggtgtgtatgca |
27399523 |
T |
|
| Q |
284 |
ttgaatttaatgatctgttattttggttatgttatctagtggatgtggtttagggcagaagtgcagaagaaccacatggaaagctcgatctgtcttgttg |
383 |
Q |
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| T |
27399522 |
ttgaatttaatgatgtgttattttggttatgttatctagtggatgtggtttagggcagaagtgcagaagaaccacatggaaagctcgatctgtcttgttg |
27399423 |
T |
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| Q |
384 |
aaaatactagtttctgttggcattaaacattgtttttatgtagcttggtagatccatatcaactctgtaatatatactagtatgtacattttcacttata |
483 |
Q |
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| T |
27399422 |
aaaatactagtttctgttggcattaaacattgtttttatgtagcttggtagatccatatcaactctgtaatatatactagtatgtacattttcacttata |
27399323 |
T |
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| Q |
484 |
cgggcttttaatagtgtgttcggtatccggtatcttggtccataagaccgagctcatactgcacagggataaccctgagtat |
565 |
Q |
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| T |
27399322 |
cgggcttttaatagtgtgttcggtatccggtatcttggtccataagaccgagctcatactgcatagggataaccctgagtat |
27399241 |
T |
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