View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_high_22 (Length: 295)
Name: NF14944_high_22
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 22200531 - 22200255
Alignment:
| Q |
5 |
accaattacggttgactaaaacttagaaagagacaactgttcgtgagctcaaggggttaatatataaatttcagttaaaattaaattattctgaagtatc |
104 |
Q |
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||||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22200531 |
accaaatacggttgactaaaacttagaaagagacaactgatcttgatctcaaggggttaatatataaatttcagttaaaattaaattattctgaagtatc |
22200432 |
T |
|
| Q |
105 |
tgagtttaatcccaactcaaagaaacagctggctaaagatcgatttcttctgagaatcgaaaggttttctttttaagaagttaaactagaataatcggaa |
204 |
Q |
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||||||| ||||||| ||||||||||| ||||||||||||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
22200431 |
tgagtttgatcccaaatcaaagaaacaactggctaaagatcaatttctttcgagaattgaaaggttttttttttaagaagttaaactagaataatc---- |
22200336 |
T |
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| Q |
205 |
agttaagnnnnnnnnnnnnnnnntacaaaccataactacctaaatcaattcacaatctttaatcatgtacttcttctcagt |
285 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22200335 |
tgttacgaaagaaaaaagaaaaatacaaaccataactacctaaatcaattcacaatctttaatcatgtacttcttttcagt |
22200255 |
T |
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