View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14944_high_5 (Length: 526)

Name: NF14944_high_5
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14944_high_5
NF14944_high_5
[»] chr7 (12 HSPs)
chr7 (286-512)||(21851973-21852199)
chr7 (341-512)||(21204478-21204649)
chr7 (341-512)||(21181714-21181885)
chr7 (340-512)||(21208771-21208946)
chr7 (6-69)||(21851871-21851934)
chr7 (118-212)||(13420183-13420277)
chr7 (118-212)||(37350098-37350192)
chr7 (142-212)||(12180560-12180630)
chr7 (369-486)||(22601828-22601945)
chr7 (143-212)||(37348803-37348872)
chr7 (169-212)||(21017729-21017772)
chr7 (143-212)||(11671208-11671277)
[»] chr8 (6 HSPs)
chr8 (118-212)||(39885973-39886067)
chr8 (142-212)||(5462002-5462072)
chr8 (142-212)||(3157958-3158028)
chr8 (118-212)||(39884684-39884778)
chr8 (169-212)||(27824480-27824523)
chr8 (159-206)||(45437755-45437802)
[»] chr5 (3 HSPs)
chr5 (142-212)||(16310020-16310090)
chr5 (142-212)||(27756706-27756776)
chr5 (142-212)||(16308634-16308704)
[»] chr2 (9 HSPs)
chr2 (142-212)||(44465011-44465081)
chr2 (141-212)||(15346932-15347003)
chr2 (141-212)||(38729982-38730053)
chr2 (133-196)||(44421254-44421317)
chr2 (142-212)||(16142294-16142364)
chr2 (142-212)||(38728252-38728322)
chr2 (161-214)||(169225-169278)
chr2 (143-212)||(472788-472857)
chr2 (143-212)||(34591792-34591861)
[»] chr6 (3 HSPs)
chr6 (143-212)||(4296328-4296397)
chr6 (112-212)||(10711807-10711907)
chr6 (166-212)||(10699298-10699344)
[»] chr3 (3 HSPs)
chr3 (143-212)||(30700364-30700433)
chr3 (168-212)||(41879992-41880036)
chr3 (143-212)||(22942406-22942475)
[»] chr4 (8 HSPs)
chr4 (128-212)||(22307739-22307823)
chr4 (142-212)||(42889732-42889801)
chr4 (133-212)||(54536608-54536687)
chr4 (118-212)||(22309035-22309129)
chr4 (143-207)||(44445048-44445112)
chr4 (166-213)||(33607535-33607582)
chr4 (398-483)||(24070694-24070779)
chr4 (142-202)||(25351721-25351781)
[»] chr1 (8 HSPs)
chr1 (141-212)||(7185776-7185847)
chr1 (128-212)||(18309153-18309237)
chr1 (142-212)||(50316971-50317041)
chr1 (143-212)||(7001265-7001334)
chr1 (143-212)||(13209643-13209712)
chr1 (143-214)||(3894084-3894155)
chr1 (142-212)||(24438868-24438938)
chr1 (128-196)||(35973181-35973249)
[»] scaffold0288 (1 HSPs)
scaffold0288 (118-209)||(19543-19633)
[»] scaffold0672 (1 HSPs)
scaffold0672 (117-212)||(425-520)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 9e-99; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 286 - 512
Target Start/End: Original strand, 21851973 - 21852199
Alignment:
Q  286 atttattaagcattgagcataatgttatctaaattaaaagctgttgtatttttcaaataggcatgggattagacaacttcaatcaggatgggctgatgga 385  Q
    ||||||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||| ||||||||||||||||||    
T  21851973 atttattaacctttgagcataatgttatctaaattaaaagctgtggtatttttgaaataggcatggcattagacaacttcagtcaggatgggctgatgga 21852072  T
Q  386 ccagcatatgtgactcaatgcccaatccaaacaggtcaaagctatgtttacaattacacaattaaaggccaaagaggaacactcttttggcatgctcaca 485  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  21852073 ccagcatatgtgacacaatgccccatccaaacaggtcaaagctatgtttacaattacacaattaaaggccaaagaggaacactcttttggcatgctcata 21852172  T
Q  486 tttcttggttaaggtcaacactctatg 512  Q
    | |||||||||||||||||||| ||||    
T  21852173 tatcttggttaaggtcaacactttatg 21852199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 341 - 512
Target Start/End: Original strand, 21204478 - 21204649
Alignment:
Q  341 aataggcatgggattagacaacttcaatcaggatgggctgatggaccagcatatgtgactcaatgcccaatccaaacaggtcaaagctatgtttacaatt 440  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  21204478 aataggcatggcattagacaacttcaatcaggatgggctgatgggccagcatatgtgactcaatgccccatccaaacagatcaaagctatgtttacaatt 21204577  T
Q  441 acacaattaaaggccaaagaggaacactcttttggcatgctcacatttcttggttaaggtcaacactctatg 512  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||    
T  21204578 acacaattaaaggccaaagaggaacactcttttggcatgctcatatatcttggttaagatcaacactctatg 21204649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 341 - 512
Target Start/End: Original strand, 21181714 - 21181885
Alignment:
Q  341 aataggcatgggattagacaacttcaatcaggatgggctgatggaccagcatatgtgactcaatgcccaatccaaacaggtcaaagctatgtttacaatt 440  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21181714 aataggcacggcattcgacaacttcaatcaggatgggctgatggaccggcatatgtgactcaatgccccatccaaacaggtcaaagctatgtttacaatt 21181813  T
Q  441 acacaattaaaggccaaagaggaacactcttttggcatgctcacatttcttggttaaggtcaacactctatg 512  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||    
T  21181814 acacaattaaaggccaaagaggaacactcttttggcatgctcatatatcttggttaagatcaacactctatg 21181885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 340 - 512
Target Start/End: Original strand, 21208771 - 21208946
Alignment:
Q  340 aaataggcatgggattagacaacttcaatcaggatgggctgatggaccagcatat---gtgactcaatgcccaatccaaacaggtcaaagctatgtttac 436  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||| |||||||||||||||||||||||||||    
T  21208771 aaataggcatggcattagacaacttcaatcaggatgggctgatggaccagcatatcatgtgactcagtgccctatccaaacaggtcaaagctatgtttac 21208870  T
Q  437 aattacacaattaaaggccaaagaggaacactcttttggcatgctcacatttcttggttaaggtcaacactctatg 512  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  21208871 aattacaccattaaaggccaaagaggaacactcttttggcatgctcatataccttggttaaggtcaacactctatg 21208946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 21851871 - 21851934
Alignment:
Q  6 agtgagatgaatattagtactatgataatttgaaattataaatatgaataaaaaacaataaata 69  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21851871 agtgtgatgcatattagtactatgataatgtgaaattataaatatgaataaaaaacaataaata 21851934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 13420183 - 13420277
Alignment:
Q  118 tcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||| |||| |||||| | ||||||||||  |||| ||||||||||||| |||| ||||||| |||||||||||| || |||||||||||    
T  13420183 tcatcatccgtttgccacatagacgtttttgtaacggattatgacggcagggactaaaaccaaaatgcttataacttacaggggttgttttagaa 13420277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 37350098 - 37350192
Alignment:
Q  118 tcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||| ||| |||| |||||| | |||||||||| ||||| ||||||||||||| |||| ||||||| |||||||||| | || |||||||||||    
T  37350098 tcatcctccgtttgccacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttataggggttgttttagaa 37350192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 12180560 - 12180630
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||||||| ||||  |||||| |||||| |||||||||| |||| ||||||||| ||||||||||||||    
T  12180560 gtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaa 12180630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 369 - 486
Target Start/End: Original strand, 22601828 - 22601945
Alignment:
Q  369 caggatgggctgatggaccagcatatgtgactcaatgcccaatccaaacaggtcaaagctatgtttacaattacacaattaaaggccaaagaggaacact 468  Q
    |||||||| ||||||||||||||||||| || ||||| ||||| ||||||  |||||  ||    ||||| | ||| ||||  || ||||||||||| ||    
T  22601828 caggatggtctgatggaccagcatatgtaacacaatgtccaattcaaacaaatcaaacatacacatacaacttcaccattactggacaaagaggaaccct 22601927  T
Q  469 cttttggcatgctcacat 486  Q
     |||||||||||||||||    
T  22601928 attttggcatgctcacat 22601945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 37348872 - 37348803
Alignment:
Q  143 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||| ||||  |||||||| |||| |||| ||||| |||||||||||||| || |||||||||||    
T  37348872 tttttgtaacagataatgacggcatggactaaaaccaaaacgtttataacttacaaggattgttttagaa 37348803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 21017729 - 21017772
Alignment:
Q  169 gaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||||| |||||||||||||||||||| || |||||||||||    
T  21017729 gaccaaaaccaaaatgtttataacttacaggggttgttttagaa 21017772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 11671208 - 11671277
Alignment:
Q  143 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||| ||||  |||||  |||||| ||||||||||  ||| ||||||||| ||||||||||||||    
T  11671208 tttttgtaacagatgctgacgagagggacgaaaatcaaaacatttgtaacttacagggtttgttttagaa 11671277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 39885973 - 39886067
Alignment:
Q  118 tcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||| ||| |||| |||||| | |||||||||| ||||| ||||||||||||| |||| ||||||| |||||||||||| || |||||||||||    
T  39885973 tcatcctccgtttgccacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttacaggggttgttttagaa 39886067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 5462072 - 5462002
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||||||| ||||  |||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||    
T  5462072 gtttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataaattacagggtctgttttagaa 5462002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 3157958 - 3158028
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||| ||||| ||||  |||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  3157958 gtttgtgtaacagatgctgacggcagggaccgaaagcaaaatgtttataacttacagggtctgttttagaa 3158028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 39884778 - 39884684
Alignment:
Q  118 tcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||| ||| |||| |||||| | |||||||||| ||||| ||| ||||||||| |||| ||||||| |||||||||||| || || ||||||||    
T  39884778 tcatcctccgtttgccacatagacgtttttgtaacagattatgaaggcagggactaaaaccaaaatgcttataacttacaagggttattttagaa 39884684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 27824480 - 27824523
Alignment:
Q  169 gaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||||||||||| |||||||||||| | ||||||||||||||    
T  27824480 gaccaaaatcaaaacgtttataacttatagggtttgttttagaa 27824523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 45437802 - 45437755
Alignment:
Q  159 tgacggcagggaccaaaatcaaaatgtttataacttacacggtttgtt 206  Q
    |||||||| ||||||||| |||||||||||||| ||||| ||||||||    
T  45437802 tgacggcatggaccaaaaccaaaatgtttataatttacaaggtttgtt 45437755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 16310020 - 16310090
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||||||| ||||  |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  16310020 gtttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataacttacaaggtctgttttagaa 16310090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 27756706 - 27756776
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||||||| | ||  |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  27756706 gtttttgtaacaaatgctgacggcagggaccaaaagcaaaatgtttataatttacagggtttgttttagaa 27756776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 16308704 - 16308634
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||||||| ||||  |||||| ||||||||||| || || | |||||||||||| ||| ||||||||||    
T  16308704 gtttttgtaacagatgatgacggtagggaccaaaagcacaaggcttataacttacagggtctgttttagaa 16308634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 44465011 - 44465081
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||||||| ||||  |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  44465011 gtttttgtaacagatactgacggcagggaccaaaagcaaaatgtttataacttacaaggtctgttttagaa 44465081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 15347003 - 15346932
Alignment:
Q  141 tgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||||| ||||| |||||||| ||||||||| ||||| |||||||| ||||| || |||||||||||    
T  15347003 tgtttttgtaacagattatgacggcaaggaccaaaagcaaaacgtttataatttacaagggttgttttagaa 15346932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 38729982 - 38730053
Alignment:
Q  141 tgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||||| |||   | ||||||||||| |||||||||| |||| ||||||||| ||||||||||||||    
T  38729982 tgtttttgtaacagaggctaacggcagggacgaaaatcaaaaggtttgtaacttacagggtttgttttagaa 38730053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 44421254 - 44421317
Alignment:
Q  133 cacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttac 196  Q
    |||||| | |||||||||| |||| |||||||||| |||||||| ||||| |||||||||||||    
T  44421254 cacataaacgtttttgtaacagatggtgacggcagagaccaaaagcaaaacgtttataacttac 44421317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 16142364 - 16142294
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||||||| ||||  |||||| |||| | |||||||||| |||| ||||||||| ||||||||||||||    
T  16142364 gtttttgtaacagatgctgacgggagggccgaaaatcaaaacgtttgtaacttacagggtttgttttagaa 16142294  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 38728322 - 38728252
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||| |||| ||||| |||||| |||||| |||||||||| |||| |||||| || ||||||||||||||    
T  38728322 gttttcgtaacagattatgacgggagggacgaaaatcaaaacgtttgtaacttgcagggtttgttttagaa 38728252  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 169225 - 169278
Alignment:
Q  161 acggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaaag 214  Q
    ||||||| |||||||| ||||| |||||||||||||| |  |||||||||||||    
T  169225 acggcagagaccaaaaccaaaacgtttataacttacaagagttgttttagaaag 169278  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 472857 - 472788
Alignment:
Q  143 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||| ||||  |||| | ||||||||||| ||||| |||||||||||||| |  |||||||||||    
T  472857 tttttgtaacagatgatgactgtagggaccaaaaacaaaacgtttataacttacatgagttgttttagaa 472788  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 34591861 - 34591792
Alignment:
Q  143 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||||| ||   |||| |||||||||||| ||||| |||||||||||| |  |||||||||||||    
T  34591861 tttttgtaatatatgaggacgacagggaccaaaagcaaaacgtttataacttaaatagtttgttttagaa 34591792  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 4296328 - 4296397
Alignment:
Q  143 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||    
T  4296328 tttttgtaatagatgatgacggcatggaccaaaaccaaaacgtttataacttacacggtttattttagaa 4296397  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 10711807 - 10711907
Alignment:
Q  112 gccagatcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttaga 211  Q
    |||| |||||| || ||||| |||||| || ||||||||||||||  |||||||||| | ||||  |||||  ||||||| ||||| || ||||||||||    
T  10711807 gccacatcatcctctatttgccacataaatatttttgtaatagatgatgacggcaggaatcaaagccaaaacatttataatttacatgggttgttttaga 10711906  T
Q  212 a 212  Q
    |    
T  10711907 a 10711907  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 10699344 - 10699298
Alignment:
Q  166 agggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||||||||||| ||||||||||||||  | |||||||||||    
T  10699344 agggaccaaaatcaaaacgtttataacttacagaggttgttttagaa 10699298  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 30700433 - 30700364
Alignment:
Q  143 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||| ||||  |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  30700433 tttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataacttacagggtgtgttttagaa 30700364  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 41880036 - 41879992
Alignment:
Q  168 ggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||| |||||||||| |||||||||||||| ||||||||||||||    
T  41880036 ggacgaaaatcaaaacgtttataacttacaaggtttgttttagaa 41879992  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 22942475 - 22942406
Alignment:
Q  143 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||| ||||  ||||||  |||||||||| ||||| ||||||||||||||  | |||||||||||    
T  22942475 tttttgtaacagatgatgacggatgggaccaaaaccaaaacgtttataacttacataggttgttttagaa 22942406  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 22307823 - 22307739
Alignment:
Q  128 tttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||| |||||| | |||||||||| ||||| ||||||||||||| |||| ||||||| |||||||||||| || |||||||||||    
T  22307823 tttgccacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttacaagggttgttttagaa 22307739  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 42889732 - 42889801
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||||||| ||| | |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  42889732 gtttttgtaacagagt-tgacggcagggaccaaaagcaaaatgtttataacttacatggtctgttttagaa 42889801  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 54536608 - 54536687
Alignment:
Q  133 cacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||| | |||||||||| |||| ||||| ||||||||||||| ||||| |||||||| ||||| ||| ||||||||||    
T  54536608 cacataaacgtttttgtaacagatggtgacagcagggaccaaaagcaaaacgtttataatttacatggtctgttttagaa 54536687  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 22309035 - 22309129
Alignment:
Q  118 tcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||| ||| |||| |||||| | ||||||||||  |||| |||||||| |||| |||| ||||||| |||||||||||| || |||||||||||    
T  22309035 tcatcctccgtttgccacatagacgtttttgtaactgattatgacggcacggactaaaaccaaaatgcttataacttacaggggttgttttagaa 22309129  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 44445048 - 44445112
Alignment:
Q  143 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttt 207  Q
    ||||||||| |||| ||||||| | |||||||| | |||| |||||||||||||| |||||||||    
T  44445048 tttttgtaacagatggtgacggtaaggaccaaagtaaaaaagtttataacttacaaggtttgttt 44445112  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 33607582 - 33607535
Alignment:
Q  166 agggaccaaaatcaaaatgtttataacttacacggtttgttttagaaa 213  Q
    |||||| |||| ||||||||||| |||||||| |||||||||||||||    
T  33607582 agggactaaaaccaaaatgtttacaacttacagggtttgttttagaaa 33607535  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 24070779 - 24070694
Alignment:
Q  398 actcaatgcccaatccaaacaggtcaaagctatgtttacaattacacaattaaaggccaaagaggaacactcttttggcatgctca 483  Q
    |||||||||||||| ||||||||||| || ||||| ||||| | ||| |||   || ||||||||||| || || |||||||||||    
T  24070779 actcaatgcccaattcaaacaggtcagagttatgtgtacaacttcaccattgttggacaaagaggaactcttttctggcatgctca 24070694  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 25351721 - 25351781
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtt 202  Q
    ||||||||||  |||  |||| ||||||||||||| ||||| |||||||||||||| ||||    
T  25351721 gtttttgtaactgatgatgacagcagggaccaaaaccaaaacgtttataacttacagggtt 25351781  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 7185776 - 7185847
Alignment:
Q  141 tgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||||| ||||  |||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  7185776 tgtttttgtaacagatgctgacggaagggaccaaaagcaaaatgtttataacttacagggtctgttttagaa 7185847  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 18309237 - 18309153
Alignment:
Q  128 tttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||||| | ||||||||||||||   ||||| |||| ||||||| ||||| |||||||||||||| || |||||||||||    
T  18309237 tttgtcacatatacgtttttgtaatagacgatgacgacaggaaccaaaaccaaaacgtttataacttacaaggattgttttagaa 18309153  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 50316971 - 50317041
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||||||| ||||  |||||| |||||| |||||||||| |||| ||||||||| ||||||||||||||    
T  50316971 gtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaa 50317041  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 7001334 - 7001265
Alignment:
Q  143 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||||||||  ||||| ||| ||||||||| |||| ||||||||||||||  |||||||||||||    
T  7001334 tttttgtaatagatgatgacgacagagaccaaaattaaaacgtttataacttacaatgtttgttttagaa 7001265  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 13209712 - 13209643
Alignment:
Q  143 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    ||||||||| |||| ||||||||||||||||||| ||||| ||||||| |||||| ||| | ||||||||    
T  13209712 tttttgtaacagatggtgacggcagggaccaaaagcaaaacgtttatatcttacagggtctattttagaa 13209643  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 3894084 - 3894155
Alignment:
Q  143 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaaag 214  Q
    ||||||||| ||||  |||| ||||||||||||| |||||||||||| ||||||| || || ||||||||||    
T  3894084 tttttgtaacagatgatgacagcagggaccaaaagcaaaatgtttattacttacaagggttattttagaaag 3894155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 24438868 - 24438938
Alignment:
Q  142 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||||||| ||||  ||||||  ||||| |||||||||| |||| ||||||||| ||||||||||||||    
T  24438868 gtttttgtaacagatgctgacgggtgggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaa 24438938  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 35973181 - 35973249
Alignment:
Q  128 tttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttac 196  Q
    |||| |||||| | |||||||||| |||| |||||||||  |||||||| ||||| |||||||||||||    
T  35973181 tttgccacatagacgtttttgtaacagatggtgacggcaatgaccaaaaccaaaacgtttataacttac 35973249  T

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Target: scaffold0288 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 19633 - 19543
Alignment:
Q  118 tcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgtttta 209  Q
    ||||| || ||||| |||||| | |||||||||||||||||||||||||  |||||||| |||| |  |||||||||||| |||||||||||    
T  19633 tcatcctctatttgccacatagacgtttttgtaatagattgtgacggcaatgaccaaaaccaaact-attataacttacaaggtttgtttta 19543  T

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Target: scaffold0672 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 425 - 520
Alignment:
Q  117 atcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 212  Q
    |||||| |||||||  |||||||| ||||| | || ||||  ||| ||  |||||||||| ||||| |||||||||||||| ||| ||||||||||    
T  425 atcatcctccatttcccacatacacgttttggcaacagatgatgatggttgggaccaaaaccaaaacgtttataacttacagggtctgttttagaa 520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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