View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14944_high_7 (Length: 471)

Name: NF14944_high_7
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14944_high_7
NF14944_high_7
[»] chr5 (2 HSPs)
chr5 (36-228)||(22918537-22918731)
chr5 (235-447)||(22918111-22918332)
[»] chr3 (4 HSPs)
chr3 (45-137)||(3522766-3522858)
chr3 (382-447)||(43787340-43787405)
chr3 (173-228)||(43787478-43787533)
chr3 (411-447)||(36155551-36155587)
[»] chr8 (1 HSPs)
chr8 (411-447)||(18208165-18208201)
[»] chr6 (1 HSPs)
chr6 (411-447)||(2267419-2267455)
[»] chr1 (1 HSPs)
chr1 (411-447)||(47742112-47742148)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 36 - 228
Target Start/End: Complemental strand, 22918731 - 22918537
Alignment:
Q  36 cacagaaacaaaaatatatcatcatcaatttgtttaatatttttcccacgaagacacactttatatgagataactataacttattcctaacacctatata 135  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22918731 cacagaaacaaaaatatatcatcatcagtttgtttaatatttttcccatgaagacacactttatatgagataactataacttattcctatcacctatata 22918632  T
Q  136 ttaatgtatt--ttttataggagataaaaattatgtaacttagtgtggtgaaatatcttgctttacatgtctttttaaacttacactcttaatat 228  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22918631 ttaatgtattttttttataggagataaaaattatgtaacttagtgtggtgaaatatcttgctttacatatctttttaaacttacactcttaatat 22918537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 235 - 447
Target Start/End: Complemental strand, 22918332 - 22918111
Alignment:
Q  235 attcataacaggttctacatttcttcatgaactcaaaacgttttcaacagaacatacaagcatatcgaattaattaagatgaagccaagtaggaaacgaa 334  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22918332 attcataacaggttctacatttcttcatgaactcaaaatgttttcaacagaacatacaagcatatcgaattaattaagatgaagccaagtaggaaacgaa 22918233  T
Q  335 aaggtcatgagggaaaagtccactgactgatatcagcaatatt--------gcta-tttcacgatttttcctgactatcagattattgctatttcacgtg 425  Q
    ||| ||||||||||||||||||||||||||||||| ||||  |        || | ||||| ||||||||||||||||||||||||||||||||||||||    
T  22918232 aagctcatgagggaaaagtccactgactgatatcaacaatggtcagcatcagccactttcatgatttttcctgactatcagattattgctatttcacgtg 22918133  T
Q  426 ttacatctaggagtgggctgaa 447  Q
    ||||||||||||||||||||||    
T  22918132 ttacatctaggagtgggctgaa 22918111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 3522858 - 3522766
Alignment:
Q  45 aaaaatatatcatcatcaatttgtttaatatttttcccacgaagacacactttatatgagataactataacttattcctaacacctatatatt 137  Q
    ||||| |||||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  3522858 aaaaaaatatcatcatcagtttgtttaatatgtttcccatgaagacacactttatataagataactataacttattcctcacacctatatatt 3522766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 382 - 447
Target Start/End: Complemental strand, 43787405 - 43787340
Alignment:
Q  382 tttcacgatttttcctgactatcagattattgctatttcacgtgttacatctaggagtgggctgaa 447  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43787405 tttcatgatttttcctgactatcagattattgctatttcacatgttacatctaggagtgggctgaa 43787340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 43787533 - 43787478
Alignment:
Q  173 ttagtgtggtgaaatatcttgctttacatgtctttttaaacttacactcttaatat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43787533 ttagtgtggtgaaatatcttgctttacatgtctttttaaacttacactcttaatat 43787478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 36155551 - 36155587
Alignment:
Q  411 ttgctatttcacgtgttacatctaggagtgggctgaa 447  Q
    |||||||||||||||| || |||||||||||||||||    
T  36155551 ttgctatttcacgtgtgacttctaggagtgggctgaa 36155587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 18208165 - 18208201
Alignment:
Q  411 ttgctatttcacgtgttacatctaggagtgggctgaa 447  Q
    |||||||||||||||| || |||||||||||||||||    
T  18208165 ttgctatttcacgtgtgacttctaggagtgggctgaa 18208201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 2267455 - 2267419
Alignment:
Q  411 ttgctatttcacgtgttacatctaggagtgggctgaa 447  Q
    |||||||||||||||| || |||||||||||||||||    
T  2267455 ttgctatttcacgtgtgacttctaggagtgggctgaa 2267419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 47742112 - 47742148
Alignment:
Q  411 ttgctatttcacgtgttacatctaggagtgggctgaa 447  Q
    |||||||||||||||| || |||||||||||||||||    
T  47742112 ttgctatttcacgtgtgacttctaggagtgggctgaa 47742148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University