View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_12 (Length: 466)
Name: NF14944_low_12
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 14 - 450
Target Start/End: Original strand, 43030390 - 43030826
Alignment:
| Q |
14 |
ggagcggttctatagattagaagaaaaataaattagaagaaaaacaaagaaatgcatcttgtgttaaggatgaaagtggttaatgagcttcagttaaaga |
113 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43030390 |
ggagcggctccatagattagaagaaaaataaattagaagaaaaacaaagaaatgcatcttgtgttaaggatgaaagtggttaatgagcttcggttaaaga |
43030489 |
T |
|
| Q |
114 |
caaattgtttgggagaatcctaattcgaaacttgattgaaacaattattggttagattttacttatcggcctaactttggattatcaaagcccttctccc |
213 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030490 |
caaattgtttgggagaattctaattcgaaacttgactgaaacaattattggttagactttacttatcggcctaactttggattatcaaagcccttctccc |
43030589 |
T |
|
| Q |
214 |
ccaataagaggagggctgagacaaaaatctcattagaaaaagatgaagatatggtagaattctcaccaacatcatgtggcaatcccatctgagtaggcct |
313 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43030590 |
ccaataagaggagggccgagacaaaaatctcattagaaaaagatgaagatatggtagaattctcaccaacatcatgtgacaatcccatctgagtaggcct |
43030689 |
T |
|
| Q |
314 |
tatactttgcaagaaaccgcaccatgattccaagccaccactcagcttatgtggtttatttaaatccggagaatagtgtaagctcccaaatgatgcatag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030690 |
tatactttgcaagaaaccgcaccatgattccaagccaccactcagcttatgtggtttatttaaatccggagaatagtgtaagctcccaaatgatgcatag |
43030789 |
T |
|
| Q |
414 |
ataaagatgcaaattaaggtgtaagaaacaataatat |
450 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
43030790 |
ataaagatgcaaattaaggtgtaagaaacaataatat |
43030826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 9e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 244 - 447
Target Start/End: Complemental strand, 46527788 - 46527585
Alignment:
| Q |
244 |
cattagaaaaagatgaagatatggtagaattctcaccaacatcatgtggcaatcccatctgagtaggccttatactttgcaagaaaccgcaccatgattc |
343 |
Q |
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||||| ||||| ||||||||||||||||| |||||||||||| | | | ||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
46527788 |
cattaaaaaaatatgaagatatggtagaagtctcaccaacattaagcgataatcccatctgagtaggccttatactttgatagaaaccgctccatgattc |
46527689 |
T |
|
| Q |
344 |
caagccaccactcagcttatgtggtttatttaaatccggagaatagtgtaagctcccaaatgatgcatagataaagatgcaaattaaggtgtaagaaaca |
443 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||||||||| ||||||| |
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| T |
46527688 |
caagccaccactcagcttatgtggtttttttaaatccggagaatagtgtaagctcccaaatgatacatagctaaatatacaaattaaggtgtcagaaaca |
46527589 |
T |
|
| Q |
444 |
ataa |
447 |
Q |
| |
|
|||| |
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|
| T |
46527588 |
ataa |
46527585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 46527905 - 46527797
Alignment:
| Q |
87 |
aagtggttaatgagcttcagttaaagacaaattgtttgggagaatcctaattcgaaacttgattgaaacaattattggttagattttacttatcggccta |
186 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||| | || |||||||| | | ||||||||||| ||||||| ||||||||||| || | |
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|
| T |
46527905 |
aagtggttaatgagcttcagttaa--------tgttcgggagaaccatacttcgaaacctaactgaaacaattaacggttagactttacttatcgtccga |
46527814 |
T |
|
| Q |
187 |
actttggattatcaaag |
203 |
Q |
| |
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|||||||||||| |||| |
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|
| T |
46527813 |
actttggattattaaag |
46527797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 638301 - 638339
Alignment:
| Q |
140 |
gaaacttgattgaaacaattattggttagattttactta |
178 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||||| |
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| T |
638301 |
gaaacctgattgaaacaattattggttaaattttactta |
638339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 32932643 - 32932609
Alignment:
| Q |
93 |
ttaatgagcttcagttaaagacaaattgtttggga |
127 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |
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|
| T |
32932643 |
ttaatgagtttcagttaaagacaaattgtttggga |
32932609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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