View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_13 (Length: 461)
Name: NF14944_low_13
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 241 - 461
Target Start/End: Complemental strand, 33570296 - 33570076
Alignment:
| Q |
241 |
cttgatctaatgttgctcccattccatccaattggattcactaccaactcgaggaatactgttgactcttgagaacttatcaaccttaaagttggcccca |
340 |
Q |
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| T |
33570296 |
cttgatctaatgttgctcccattccatccaattggattcactaccaactcgaggaatactgttgactcttgagaacttatcaaccttaaagttggcccca |
33570197 |
T |
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| Q |
341 |
cacatcactccttcaccgtctatccttggcattgccttcaacttgttcaatggatgctcaaagctcattaaacctccttcactatgaaacatacaccctg |
440 |
Q |
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| T |
33570196 |
cacatcactccttcactgtctatccttggcattgccttcaacttgttcaacggatgctcaaagctcattaaacctccttcactatgaaacatacaccctg |
33570097 |
T |
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| Q |
441 |
cattcatgattcaatgttatc |
461 |
Q |
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| T |
33570096 |
cattcatgattcaatgttatc |
33570076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 33570533 - 33570460
Alignment:
| Q |
4 |
cgagtgaaaagaaaatactaacacaacactatatatgtacttaaaaacacttcactaccttgttgcttagaagg |
77 |
Q |
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| T |
33570533 |
cgagagaaaagaaaatactaacacaacactatatatgtacttaaaaacacttcactaccttgttgcttagaagg |
33570460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 33570408 - 33570346
Alignment:
| Q |
129 |
ggataaggcaaggtaggtggtggtagggttggctaggaaagtagcattgatgaagtacagtag |
191 |
Q |
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| T |
33570408 |
ggataaggcaaggtaggtggtggtagggttggctaggaaagtagcattgatgaagcacagtag |
33570346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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