View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_14 (Length: 459)
Name: NF14944_low_14
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 103 - 443
Target Start/End: Complemental strand, 1172159 - 1171817
Alignment:
| Q |
103 |
tatataggtggctcaatcgtgaatggcgggcacaatggtgggtataatggtgggtacaatggcactcagaattctgcaacaacattatctgcatggcctc |
202 |
Q |
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| T |
1172159 |
tatataggtggctcaatcgcgaatggcgggcacaatggtggatataatggtgggtacaatggcactcagaattctgcaacaacattatctgcatggcctc |
1172060 |
T |
|
| Q |
203 |
attttagtgtctccacattgattttgtgtttgagcttttggttttaaacacatttgtttcacttctagtagtttagtttcatttttagttgctattattt |
302 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1172059 |
attttagtgtctccacattgattttgtgtttgagtttttggctttaaacacatttgtttcacttctagtagtttagtttcatttttagttgctattattt |
1171960 |
T |
|
| Q |
303 |
agacctacattaatcca--cttagtctttattgctactaaatatatattttgaccgcaattaatatcatgttctcttgttgatttgtttgtgtcatttgt |
400 |
Q |
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| T |
1171959 |
agacctacattaatccactcttagtctttattgctactaaatatatattttgaccgcaattaatatcatgttctcttgttgatttgtttgtgtcatttgt |
1171860 |
T |
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| Q |
401 |
aaatgtagtatgaatagatgtattaatctttgcatgttgctga |
443 |
Q |
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| T |
1171859 |
aaatgtagtatgaatagatgtattaatctttgcatgttgctga |
1171817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 103 - 343
Target Start/End: Complemental strand, 1181407 - 1181162
Alignment:
| Q |
103 |
tatataggtggctcaatcgtgaatggcgggcacaatggtgggtataatggtgggtacaatggcactcagaattctgcaacaacattatctgcatggcctc |
202 |
Q |
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| T |
1181407 |
tatataggtggctcaatcgccaatggcgggcacaatggtggatataatggtgggtacaatggcactcagaattctgcaacaacattatctgcatggcctc |
1181308 |
T |
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| Q |
203 |
attttagtgtctccacattgattttgtgtttgagcttttggttttaaacacatttgtttcacttctagtag---tttagtttcatttttagttgctatta |
299 |
Q |
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| T |
1181307 |
atttttgtgtctcaactttgattttgtgtttgagcttttggctttaaacacatttgttttacttctagtagtaattaagtttcatttttagttgctatta |
1181208 |
T |
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| Q |
300 |
tttagacctacattaatcca--cttagtctttattgctactaaata |
343 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1181207 |
tttagacctacattaatccactcttagtctttattgctactaaata |
1181162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 148 - 332
Target Start/End: Complemental strand, 1164726 - 1164542
Alignment:
| Q |
148 |
aatggtgggtacaatggcactcagaattctgcaacaacattatctgcatggcctcattttagtgtctccacattgattttgtgtttgagcttttggtttt |
247 |
Q |
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||||||||| ||||||| ||||| ||||||||| |||||||||| | | |||||||| || |||| || ||||||||||| ||| ||||||||||| ||| |
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| T |
1164726 |
aatggtgggcacaatggtactcataattctgcatcaacattatcgggagggcctcatatttgtgtatcaacattgattttatgtatgagcttttggcttt |
1164627 |
T |
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| Q |
248 |
aaacacatttgtttcacttctagtagtttagtttcatttttagttgctattatttagacctacattaatc-cacttagtctttatt |
332 |
Q |
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| T |
1164626 |
agacaca-tggtttcacttccacaagttaaatttcatctttagttgcttctatttaggtctacattaatctctcttagtctttatt |
1164542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 1148559 - 1148459
Alignment:
| Q |
148 |
aatggtgggtacaatggcactcagaattctgcaacaacattatctgcatggcctcattttagtgtctccacattgattttgtgtttgagcttttggtttt |
247 |
Q |
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||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| ||| ||||||||||| ||| |
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| T |
1148559 |
aatggtgggcacaatggtactcataattctgcaacaacattatctgcagtgcctcatttttgtgtctcaacattgattttatgtatgagcttttggcttt |
1148460 |
T |
|
| Q |
248 |
a |
248 |
Q |
| |
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| |
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| T |
1148459 |
a |
1148459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 342 - 443
Target Start/End: Complemental strand, 1180886 - 1180783
Alignment:
| Q |
342 |
tatatattttgaccgcaatta---atatcatgttctcttgttgatttgtttgtgtcattt-gtaaatgtagtatgaatagatgtattaatctttgcatgt |
437 |
Q |
| |
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|||||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |||| |
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| T |
1180886 |
tatatattttgatcgcaattattaatattatgttctcttgttgatttgtttgtgtctttttgtaaat--agtatgaatagatgtattaatctttgtatgt |
1180789 |
T |
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| Q |
438 |
tgctga |
443 |
Q |
| |
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|||||| |
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| T |
1180788 |
tgctga |
1180783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 1141766 - 1141662
Alignment:
| Q |
174 |
ttctgcaacaacattatctgcatggcctcattttagtgtctccacattgattttgtgtttgagcttttggttttaaacacatttgtttcacttctagtag |
273 |
Q |
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||||||| || ||||||||||| ||||| || || ||||||| ||||| ||||| ||||||||||||||||| ||| || | |||||||||||| | ||| |
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| T |
1141766 |
ttctgcatcatcattatctgcagggccttatgtttgtgtctcaacatttattttatgtttgagcttttggttataatcata-ttgtttcacttccactag |
1141668 |
T |
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| Q |
274 |
tttagt |
279 |
Q |
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|||||| |
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| T |
1141667 |
tttagt |
1141662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 394
Target Start/End: Complemental strand, 1148339 - 1148247
Alignment:
| Q |
307 |
ctacattaatcc--acttagtctttattgctactaaata---tatattttgaccgcaattaatatcatgttctcttgttgatttgtttgtgtc |
394 |
Q |
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|||||||||||| |||| |||||||||||||||||||| ||||||||| || |||||| | ||||||| ||||||||||| ||||||||| |
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| T |
1148339 |
ctacattaatcctcactttgtctttattgctactaaatactatatattttggccacaattagtctcatgttttcttgttgattagtttgtgtc |
1148247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 1137112 - 1137003
Alignment:
| Q |
174 |
ttctgcaacaacattatctgcatggcctcattttagtgtctccacattgattttgtgtttgagcttttggttttaaacacatttgtttcacttctagtag |
273 |
Q |
| |
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||||||| || ||||||||||| ||||| || || ||||||| ||||| |||| ||||||||||||||| ||||| ||| |||||||||||| | ||| |
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| T |
1137112 |
ttctgcaccatcattatctgcagggccttatgtttgtgtctcaacatttcttttatgtttgagcttttggctttaattaca-ttgtttcacttccactag |
1137014 |
T |
|
| Q |
274 |
tttagtttcat |
284 |
Q |
| |
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|||||| |||| |
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|
| T |
1137013 |
tttagtatcat |
1137003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 1133348 - 1133311
Alignment:
| Q |
405 |
gtagtatgaatagatgtattaatctttgcatgttgctg |
442 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
1133348 |
gtagtatgaatagatgtatgaatctttgcatgttgctg |
1133311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 1164544 - 1164491
Alignment:
| Q |
359 |
attaatatcatgttctcttgttgatttgtttgtgtcatttgtaaatgtagtatg |
412 |
Q |
| |
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|||||||||||||| |||| |||||| |||| | ||||||| |||||||||||| |
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| T |
1164544 |
attaatatcatgttttcttattgattagtttatatcatttggaaatgtagtatg |
1164491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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