View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14944_low_15 (Length: 456)

Name: NF14944_low_15
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14944_low_15
NF14944_low_15
[»] chr8 (5 HSPs)
chr8 (14-440)||(34812095-34812518)
chr8 (68-196)||(11717969-11718098)
chr8 (68-166)||(5798230-5798327)
chr8 (69-195)||(37253808-37253933)
chr8 (75-123)||(30634849-30634897)
[»] chr3 (8 HSPs)
chr3 (68-198)||(38889241-38889371)
chr3 (42-157)||(39008566-39008680)
chr3 (68-197)||(37317878-37318006)
chr3 (68-123)||(44806070-44806125)
chr3 (68-122)||(51726136-51726190)
chr3 (43-123)||(48447585-48447666)
chr3 (76-120)||(51335102-51335146)
chr3 (71-122)||(13877450-13877501)
[»] chr4 (5 HSPs)
chr4 (37-157)||(17490575-17490694)
chr4 (68-197)||(4060948-4061077)
chr4 (68-196)||(29146542-29146669)
chr4 (68-195)||(7678113-7678235)
chr4 (104-196)||(6008920-6009012)
[»] chr5 (5 HSPs)
chr5 (68-195)||(12601964-12602091)
chr5 (87-161)||(41724672-41724746)
chr5 (69-120)||(27511603-27511654)
chr5 (59-164)||(5245869-5245972)
chr5 (75-123)||(22510850-22510898)
[»] chr2 (6 HSPs)
chr2 (68-158)||(19076808-19076898)
chr2 (68-196)||(6213507-6213631)
chr2 (68-163)||(43792864-43792957)
chr2 (68-122)||(6456991-6457045)
chr2 (68-118)||(31415782-31415832)
chr2 (75-123)||(33134627-33134675)
[»] chr1 (5 HSPs)
chr1 (52-196)||(51051514-51051664)
chr1 (68-164)||(37213988-37214084)
chr1 (68-164)||(47335013-47335111)
chr1 (75-123)||(31647535-31647583)
chr1 (68-122)||(43449532-43449586)
[»] chr7 (4 HSPs)
chr7 (68-158)||(23709353-23709443)
chr7 (73-122)||(34875413-34875462)
chr7 (75-123)||(10974388-10974436)
chr7 (75-123)||(43237361-43237408)
[»] scaffold0449 (1 HSPs)
scaffold0449 (43-123)||(6020-6101)
[»] chr6 (1 HSPs)
chr6 (68-123)||(31254065-31254120)


Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 440
Target Start/End: Complemental strand, 34812518 - 34812095
Alignment:
Q  14 ctccacttttaagagaaagatttgcttggacacatgacttaggcgcacacaaacaaaatacattttatttaactatttaaaaaataaatgttatttaatt 113  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34812518 ctccacatttaagagaaagatttgtttggacacatgacttaggcgcacacaaacaaaatacattttatttaactatttaaaaaataaatgttatttaatt 34812419  T
Q  114 attttctctcacaactttttcttaattatgtatatgtgtctaaatttagtgtctgaacgcttgtgctcaagtaagtattttccaacatttaattgtgtga 213  Q
    |||||||||||| ||||||| | |||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||    
T  34812418 attttctctcactactttttttcaattatgtatttgtgtttaaatttagtgtctaaacgcttgtgctcaagtaagtattttttcacatttaattgtgtga 34812319  T
Q  214 gttctagccattaagnnnnnnntgaagacttgaatcatcttatgcttggaccggctgagtatataatctaaataatttaggtgactgagaaaattggaga 313  Q
    |  ||||  |  |||       | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34812318 g--ctag--aagaagaaaaaaattaagacttgaatcatcttatgcttggaccggctgagtatataatctaaataatttaggtgactgagaaaattggaga 34812223  T
Q  314 aaaaacattcataagagttaatcaggggatagtatttttaatattggtaccaatgttggattactccaccttacacaggttgatggtgggcaagtgtaaa 413  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34812222 aaaaacattcataagagttaatca--ggatagtatttttaatattggtaccaatgttggattactccaccttacacaggttgatggtgggcaagtgtaaa 34812125  T
Q  414 ctgaactctact---acatataatgaaatt 440  Q
    ||||||||||||   |||||||||||||||    
T  34812124 ctgaactctactacaacatataatgaaatt 34812095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 11718098 - 11717969
Alignment:
Q  68 aaaatacattttatttaactattt-aaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaatttagtgtc 166  Q
    |||||| ||||||| ||| ||||| |||||||||||  ||||||||||||||| ||| | ||||||| | || ||||||| | |||||| ||||||||||    
T  11718098 aaaatatattttatgtaaatattttaaaaaataaatagtatttaattattttccctctctactttttgtcaagtatgtatgtatgtctacatttagtgtc 11717999  T
Q  167 tgaacgcttgtgctcaagtaagtattttcc 196  Q
    | ||  ||| ||| |||| ||| |||||||    
T  11717998 taaatacttatgcacaagaaagcattttcc 11717969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 5798327 - 5798230
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaatttagtgtc 166  Q
    ||||| |||||||||| | |||||||||||| | | ||||||||||||||||||   | || |||| | |||| |||||||||||||||| ||||||||    
T  5798327 aaaatgcattttatttcattatttaaaaaattattattatttaattattttctccatctacctttt-tcaattgtgtatatgtgtctaaacttagtgtc 5798230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 37253808 - 37253933
Alignment:
Q  69 aaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaatttagtgtctg 168  Q
    ||||||||||||||||| ||||| |||||||||| |||||| ||||| || |||| | |  |||| | ||| || ||| |||| ||||||||||||||      
T  37253808 aaatacattttatttaattattt-aaaaataaatattattttattatgttttctctccatcttttttcaataatatatgtgtgactaaatttagtgtcca 37253906  T
Q  169 aacgcttgtgctcaagtaagtattttc 195  Q
    |||    |||||||| |||||||||||    
T  37253907 aacataggtgctcaaataagtattttc 37253933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 30634897 - 30634849
Alignment:
Q  75 attttatttaactatttaaaaaataaatgttatttaattattttctctc 123  Q
    |||| |||||| ||||||||||  |||| ||||||||||||||||||||    
T  30634897 atttcatttaattatttaaaaaggaaatattatttaattattttctctc 30634849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 38889241 - 38889371
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaatttagtgtct 167  Q
    |||||||||||||||| | |||||||||||||||   ||||||||||||||||||  | || |||||| |||||||||| |||||||||||||||||||     
T  38889241 aaaatacattttatttcattatttaaaaaataaacactatttaattattttctctttctaccttttctcaattatgtatgtgtgtctaaatttagtgtcc 38889340  T
Q  168 gaacgcttgtgctcaagtaagtattttccaa 198  Q
     ||  |||||| |||||||||||||||||||    
T  38889341 aaatacttgtgttcaagtaagtattttccaa 38889371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 39008566 - 39008680
Alignment:
Q  42 gacacatgacttaggcgcacacaaacaaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaatta 141  Q
    ||||||| | |||||| | |||| |||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||  | |||||||| |||||    
T  39008566 gacacatcatttaggcactcacacacaaaatacattttatttaattatttgaaaaataagtattatttaattattttctctc-tatctttttctcaatta 39008664  T
Q  142 tgtatatgtgtctaaa 157  Q
    ||||| ||||||||||    
T  39008665 tgtatgtgtgtctaaa 39008680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 37318006 - 37317878
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaatttagtgtct 167  Q
    |||||||||||||||| | |||||||||||||||   ||||| ||||||||||||  | ||  |||||||||||||||| |||||||||||||||||||     
T  37318006 aaaatacattttatttcattatttaaaaaataaacactatttcattattttctctttctac-ctttcttaattatgtatgtgtgtctaaatttagtgtcc 37317908  T
Q  168 gaacgcttgtgctcaagtaagtattttcca 197  Q
     ||   ||||| |||| |||||||||||||    
T  37317907 aaatatttgtgttcaattaagtattttcca 37317878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 44806070 - 44806125
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctc 123  Q
    |||||||||||||||||| |||||||||||||||| | |||||||||| |||||||    
T  44806070 aaaatacattttatttaattatttaaaaaataaatatgatttaattatcttctctc 44806125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 51726190 - 51726136
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctct 122  Q
    ||||||||| | ||||| |||||| ||||||| ||||||||||||||||||||||    
T  51726190 aaaatacatatcatttatctattttaaaaatacatgttatttaattattttctct 51726136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 48447585 - 48447666
Alignment:
Q  43 acacatgacttaggcgcacacaaacaaaa-tacattttatttaactatttaaaaaataaatgttatttaattattttctctc 123  Q
    |||||| |||||||| | |||| |||||| || |||| | |||| ||||||||||| |||| ||||||||||||||||||||    
T  48447585 acacatcacttaggcacccacacacaaaagtatatttcaattaattatttaaaaaaaaaatattatttaattattttctctc 48447666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 51335146 - 51335102
Alignment:
Q  76 ttttatttaactatttaaaaaataaatgttatttaattattttct 120  Q
    |||||||||| ||||||||||||| || |||||||||||||||||    
T  51335146 ttttatttaattatttaaaaaatacatattatttaattattttct 51335102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 13877450 - 13877501
Alignment:
Q  71 atacattttatttaactatttaaaaaataaatgttatttaattattttctct 122  Q
    |||||||| |||||| ||||||||| ||| || |||||||||||||||||||    
T  13877450 atacatttcatttaattatttaaaacatagatattatttaattattttctct 13877501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 37 - 157
Target Start/End: Complemental strand, 17490694 - 17490575
Alignment:
Q  37 gcttggacacatgacttaggcgcacacaaacaaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttctt 136  Q
    |||||||||||| ||||| || | |||| |||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||  | ||||||||     
T  17490694 gcttggacacatcacttatgcactcacacacaaaatacattttatttaattatttgaaaaataagtattatttaattattttctctc-tatctttttctc 17490596  T
Q  137 aattatgtatatgtgtctaaa 157  Q
    |||||||||| ||||||||||    
T  17490595 aattatgtatgtgtgtctaaa 17490575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 4060948 - 4061077
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaatttagtgtct 167  Q
    |||||||||||||||| | ||| ||||||||| || |||||||||||||||| ||  | || |||||| |||| ||||| |||||||||||||||||||     
T  4060948 aaaatacattttatttcattatctaaaaaatacatattatttaattattttccctttctaccttttctcaattgtgtatgtgtgtctaaatttagtgtcc 4061047  T
Q  168 gaacgcttgtgctcaagtaagtattttcca 197  Q
     ||| ||||||  |||||||||||||||||    
T  4061048 aaactcttgtgtccaagtaagtattttcca 4061077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 29146542 - 29146669
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaatttagtgtct 167  Q
    |||||||||||||||| | |||| ||||||||||| |||||||||||||||||||  | || |||||| |||| || || ||| |||||||||| ||||     
T  29146542 aaaatacattttatttcattattcaaaaaataaatattatttaattattttctctttctacattttctcaattctgcatgtgtatctaaatttactgtcc 29146641  T
Q  168 gaacgcttgtgctcaagtaagtattttcc 196  Q
     ||  |||||| |||||||||||||||||    
T  29146642 aaatacttgtg-tcaagtaagtattttcc 29146669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 7678113 - 7678235
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaatttagtgtct 167  Q
    |||||||||||||||| | ||||||||||| |||      |||||||| ||||||  | |  |||||| |||||||||| |||| ||||||||||||||     
T  7678113 aaaatacattttattttattatttaaaaaacaaac-----ttaattatcttctctttctatcttttctcaattatgtatgtgtgcctaaatttagtgtcc 7678207  T
Q  168 gaacgcttgtgctcaagtaagtattttc 195  Q
     ||| ||||||  |||||||||||||||    
T  7678208 aaacccttgtgtccaagtaagtattttc 7678235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 6008920 - 6009012
Alignment:
Q  104 ttatttaattattttctctcacaac-tttttcttaattatgtatatgtgtctaaatttagtgtctgaacgcttgtgctcaagtaagtattttcc 196  Q
    |||||||||||||||||||  | || ||||||| || | ||||||||| |||||||||||||||| ||| ||||||  | ||||||||||||||    
T  6008920 ttatttaattattttctctttctacctttttctcaaatgtgtatatgt-tctaaatttagtgtctaaacccttgtgtcccagtaagtattttcc 6009012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 12602091 - 12601964
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaatttagtgtct 167  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||| |||  | || ||| |||||||||||||  ||||||||||||| || ||    
T  12602091 aaaatacattttatttcgttatttaaaaaataaatgttatttaattattttttctttctacctttacttaattatgtatgcgtgtctaaatttaatgcct 12601992  T
Q  168 gaacgcttgtgctcaagtaagtattttc 195  Q
     ||| ||||||  |||||||||||||||    
T  12601991 aaacacttgtgtccaagtaagtattttc 12601964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 41724672 - 41724746
Alignment:
Q  87 tatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaattta 161  Q
    ||||||| ||||||||||||||||||||||||||||| | ||||||| | |||||||||| ||||  ||||||||    
T  41724672 tatttaagaaataaatgttatttaattattttctctctctactttttttcaattatgtatttgtgcataaattta 41724746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 27511603 - 27511654
Alignment:
Q  69 aaatacattttatttaactatttaaaaaataaatgttatttaattattttct 120  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||| |||||    
T  27511603 aaatacattttatttaattatttaaaaaataaatattatttaattactttct 27511654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 5245972 - 5245869
Alignment:
Q  59 cacacaaacaaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaat 158  Q
    |||||| | ||||||||| |||||| | ||||||||||||| ||  ||||||||||||||||||    |||||| || |||| ||||| |||||||||||    
T  5245972 cacacacataaaatacatcttatttcattatttaaaaaatatat--tatttaattattttctctttttacttttcctcaattgtgtatgtgtgtctaaat 5245875  T
Q  159 ttagtg 164  Q
    ||||||    
T  5245874 ttagtg 5245869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 22510898 - 22510850
Alignment:
Q  75 attttatttaactatttaaaaaataaatgttatttaattattttctctc 123  Q
    |||| |||||| ||||||||||  |||| ||||||||||||||||||||    
T  22510898 atttcatttaattatttaaaaaggaaatattatttaattattttctctc 22510850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 19076808 - 19076898
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaat 158  Q
    |||||||| ||||||| | |||||||||||||||| |||||||||||||||||||  | || |||||| |||| |||||||||||||||||    
T  19076808 aaaatacaatttatttcattatttaaaaaataaatattatttaattattttctctttctaccttttctcaattgtgtatatgtgtctaaat 19076898  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 6213631 - 6213507
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaatttagtgtct 167  Q
    |||||||||||||||| | |||  ||||||||||| |||||||||||||||||||  | || |||||| |||||||  ||||||||| ||||||||| |     
T  6213631 aaaatacattttatttcattat--aaaaaataaatattatttaattattttctctttctaccttttctcaattatg--tatgtgtcttaatttagtgccc 6213536  T
Q  168 gaacgcttgtgctcaagtaagtattttcc 196  Q
     ||| ||||||  ||||||||||||||||    
T  6213535 aaacccttgtgtccaagtaagtattttcc 6213507  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 43792957 - 43792864
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaatttagt 163  Q
    |||||||||||||||||| |||||||||||||||| | || ||||||||||||||  | |  |||||| |||||||||| |||| |||||||||||    
T  43792957 aaaatacattttatttaattatttaaaaaataaatatgatctaattattttctct--ctatcttttctcaattatgtatgtgtgcctaaatttagt 43792864  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 6457045 - 6456991
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctct 122  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||||||    
T  6457045 aaaatacattttatttcattatttaaaaaataaatattatttaattattttctct 6456991  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 31415832 - 31415782
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattatttt 118  Q
    |||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  31415832 aaaatacattttatttaattatttaaaaaataagtattatttaattatttt 31415782  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 33134675 - 33134627
Alignment:
Q  75 attttatttaactatttaaaaaataaatgttatttaattattttctctc 123  Q
    |||| |||||| ||||||||||  |||| ||||||||||||||||||||    
T  33134675 atttcatttaattatttaaaaagaaaatattatttaattattttctctc 33134627  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 51051514 - 51051664
Alignment:
Q  52 ttaggcgcacacaaacaaaa-tacattttatttaactatttaaaaaataaat-gt----tatttaattattttctctcacaactttttcttaattatgta 145  Q
    ||||||||||||| | |||| |||||||||||| | |||||||||||||||  ||    ||||||||||||||||||  | || |||||| |||||||||    
T  51051514 ttaggcgcacacacataaaaatacattttatttcattatttaaaaaataaacagtacactatttaattattttctctttctaccttttctcaattatgta 51051613  T
Q  146 tatgtgtctaaatttagtgtctgaacgcttgtgctcaagtaagtattttcc 196  Q
    | |||||||||||||||||||  ||  ||||||  ||||||||||||||||    
T  51051614 tgtgtgtctaaatttagtgtccaaatacttgtgtccaagtaagtattttcc 51051664  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 37214084 - 37213988
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaatttagtg 164  Q
    |||||| ||||||||| | |||||||||| ||||  |||||||||||||||||||  | || |||||| |||||||||| |||||||||||||||||    
T  37214084 aaaatatattttatttcattatttaaaaattaaacattatttaattattttctctttctaccttttctcaattatgtatgtgtgtctaaatttagtg 37213988  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 47335111 - 47335013
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctc--tcacaactttttcttaattatgtatatgtgtctaaatttagtg 164  Q
    |||||||||||||||||| |||||||||||||||| | || |||||||||||||  || | |  |||||| |||||||||| |||| ||||||||||||    
T  47335111 aaaatacattttatttaattatttaaaaaataaatatgatctaattattttctctttctctatcttttctcaattatgtatgtgtgcctaaatttagtg 47335013  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 31647535 - 31647583
Alignment:
Q  75 attttatttaactatttaaaaaataaatgttatttaattattttctctc 123  Q
    |||| |||||| ||||||||||| |||| ||||||||||||||||||||    
T  31647535 atttcatttaattatttaaaaaagaaatattatttaattattttctctc 31647583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 43449586 - 43449532
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctct 122  Q
    ||||||||| | |||||| ||||| ||||||| || |||||||||||||||||||    
T  43449586 aaaatacatatcatttaattattttaaaaatacatattatttaattattttctct 43449532  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 23709443 - 23709353
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctcacaactttttcttaattatgtatatgtgtctaaat 158  Q
    |||||| |||| |||||| ||||||||||| |||| |||||||||||||||||||| | |   ||| |||||||||||| ||||| |||||    
T  23709443 aaaatatatttcatttaattatttaaaaaagaaatattatttaattattttctctctctataattttttaattatgtatgtgtgtttaaat 23709353  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 34875462 - 34875413
Alignment:
Q  73 acattttatttaactatttaaaaaataaatgttatttaattattttctct 122  Q
    ||||||||||||| ||||||||||||| || |||||||||||||||||||    
T  34875462 acattttatttaattatttaaaaaatatatattatttaattattttctct 34875413  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 10974388 - 10974436
Alignment:
Q  75 attttatttaactatttaaaaaataaatgttatttaattattttctctc 123  Q
    |||| |||||| ||||||||||  |||| ||||||||||||||||||||    
T  10974388 atttcatttaattatttaaaaaggaaatattatttaattattttctctc 10974436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 43237361 - 43237408
Alignment:
Q  75 attttatttaactatttaaaaaataaatgttatttaattattttctctc 123  Q
    |||| |||||| ||||||||||| |||| ||||||||||||||||||||    
T  43237361 atttcatttaattatttaaaaaa-aaatattatttaattattttctctc 43237408  T

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Target: scaffold0449 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 6020 - 6101
Alignment:
Q  43 acacatgacttaggcgcacacaaacaaaa-tacattttatttaactatttaaaaaataaatgttatttaattattttctctc 123  Q
    |||||| | |||||| |||||| | |||| || |||| |||||| ||||||||||| |||| ||||||||||||||||||||    
T  6020 acacatcatttaggcacacacacaaaaaagtatatttcatttaattatttaaaaaaaaaatattatttaattattttctctc 6101  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 31254065 - 31254120
Alignment:
Q  68 aaaatacattttatttaactatttaaaaaataaatgttatttaattattttctctc 123  Q
    |||||||||||| ||||| ||||| |||||||||| | || |||||||||||||||    
T  31254065 aaaatacattttttttaattatttgaaaaataaatatgatctaattattttctctc 31254120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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