View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14944_low_2 (Length: 660)

Name: NF14944_low_2
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14944_low_2
NF14944_low_2
[»] chr2 (1 HSPs)
chr2 (17-648)||(15065164-15065795)


Alignment Details
Target: chr2 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 17 - 648
Target Start/End: Original strand, 15065164 - 15065795
Alignment:
Q  17 aacaacatgagaatctatacacattattggttatccaaatcgtgcaacaataaagttgcaatggtacacttcttgtccatgaatccatgaaggagaagag 116  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15065164 aacaacatgagaatctatacacattcttagttatccaaatcgtgcaacaataaagttgcaatggtacacttctcgtccatgaatccatgaaggagaagag 15065263  T
Q  117 aaaagaaggtagatgggaaagagaaatatagggaggaggagggggttagatgaattatttagaaaaaatgaactttttactattgactttttaccaatag 216  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15065264 aaaagaaggtagatgggaaagagaaatagagggaggaggagggggttagatgaattatttagaaaaaatgaactttttactattgactttttaccaatag 15065363  T
Q  217 tccccacaagagcaagttccatttctgaaatgatggaatcttctaacatctctaagaatgatttccctatccacaatctttgatatgaatttagtagcaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15065364 tccccacaagagcaagttccatttctgaaatgatggaatcttctaacatctctaagaatgatttccctatccacaatctttgatatgaatttagtggcaa 15065463  T
Q  317 catgacagtcattgcagaccctaaggtttttagcaactctaatggtagtaccaggagaagtatttaaaaggccaaaagctattgccaatctctcactatg 416  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15065464 catgacagtcattgcagaccctaagatttttagcaactctaatggtagtaccaggagaagtatttaaaaggccaaaagctattgccaatctctcactatg 15065563  T
Q  417 cccacaaagcatagtttctttctcttcctcaccgacattgtgaagtacacaagaagtatcaggtacatatccctcttttttcattcttaatgacagagtt 516  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15065564 cccacaaagcatagtttctttctcttcctcgccgacattgtgaagtacacaagaagtatcaggtacatatccctcttttttcattcttaatgacagagtt 15065663  T
Q  517 tcaagatattcatggacctctttactttgtggatgtgaaacatcccctgccaaaaacttgtgaacctcatcgccatgttcaatccaactacatccaggtt 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15065664 tcaagatattcatggacctctttactttgtggatgtgaaacatcccctgccaaaaacttgtgaacctcatcgccatgttcaatccaactacatccaggtt 15065763  T
Q  617 cttttcttactcccttttccttcatattcttc 648  Q
    ||||||||||||||||||||||||| ||||||    
T  15065764 cttttcttactcccttttccttcattttcttc 15065795  T

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