View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_23 (Length: 318)
Name: NF14944_low_23
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 18669823 - 18669989
Alignment:
| Q |
18 |
atagacaagttgaaattttatttggtacgagcatgggtagtcgttgactatgaattaaatgtaatctcttannnnnnnaatcgcttacatcgcgaaatac |
117 |
Q |
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| T |
18669823 |
ataggcaagttgaaattttatttggtacgagcatgggtagtcgttgactaagaattaaatgtaatctcttatttttt-aatcacttacatcgctaaatac |
18669921 |
T |
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| Q |
118 |
catactaagagttatgatgaatctcattatttttaaactcttcttatttcaatatgatttaatgtttg |
185 |
Q |
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| T |
18669922 |
catactaagggttatgatgaatctcattatttttaaactcttcttatttcaatatgatttaatgtttg |
18669989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 18663405 - 18663573
Alignment:
| Q |
18 |
atagacaagttgaaattttatttggtacgagcatgggtagtcgttgactatgaattaaatgtaatctcttannnnnnnaatcgcttacatcgcgaaatac |
117 |
Q |
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| T |
18663405 |
ataggcaagttgaaattttatttggtacgagcatgggtagtcgttgactaagaattaaatgtaatctcttatttttt-aatcacttacatcgctaaatac |
18663503 |
T |
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| Q |
118 |
catactaagagttatgatgaatctcattatttttaaactcttcttatttca--atatgatttaatgtttg |
185 |
Q |
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| T |
18663504 |
catactaagggttatgatgaatctcattatttttaaactcttcttatttcaatatatgatttaatgtttg |
18663573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 41489137 - 41488978
Alignment:
| Q |
23 |
caagttgaaattttatttggtacgagcatgggtagtcgttgactatgaattaaatgtaatctcttannnnnnn-aatcgcttacatcgcgaaataccata |
121 |
Q |
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| T |
41489137 |
caagttaaaagtttattttgtacgaacatcagtagtcgttgattaagaattaaatgtaatctttaattttttttaatcccttacatcgctaaataccata |
41489038 |
T |
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| Q |
122 |
ctaagagttatgatgaatctcattatttttaaactcttcttatttcaatatgatttaatg |
181 |
Q |
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| T |
41489037 |
ctaaaggttatgatgaatttcattatttttaaactcttcttattttaatatgatttaatg |
41488978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 41488908 - 41488851
Alignment:
| Q |
253 |
acaaggaataattataaagttggttaattttgattgaactatgtgattgccctttgct |
310 |
Q |
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| T |
41488908 |
acaaggaataattataaagttggtgaattttgtttgaactatgtgactgccctctgct |
41488851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 41484361 - 41484316
Alignment:
| Q |
266 |
ataaagttggttaattttgattgaactatgtgattgccctttgcta |
311 |
Q |
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| T |
41484361 |
ataaagttggtgaattttgtttgaactatgcgattgtcctttgcta |
41484316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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