View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_24 (Length: 313)
Name: NF14944_low_24
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 27777239 - 27777530
Alignment:
| Q |
1 |
acaaagcattgaatggacatatgatatgtcactcaccaactgctgcaccatcttcctgtgcacaaagctatgacgatcactttctaccacctaagaaacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27777239 |
acaaagcattgaatggacatatgatatgtcactcaccaactgctgcatcatcttcctctgcacaaagctatgacgatcactttctaccacctaagaaacg |
27777338 |
T |
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| Q |
101 |
acaggtgctaagaagaagaagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcaaggcggtttcgagacaccacaa |
200 |
Q |
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| T |
27777339 |
gcaggtactaagaagaagaagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcacggcggtttcgagacaccacaa |
27777438 |
T |
|
| Q |
201 |
gattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaacgacgaaggggaaacagaaatagggtcaagagttgtgaagaa |
295 |
Q |
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| T |
27777439 |
gattgaaaggaacctactgcctctaatcaaagtattgaagagaagaagatga---atgaaggtgaaacagaactagggtcaaaagttgtgaagaa |
27777530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 27782722 - 27782431
Alignment:
| Q |
1 |
acaaagcattgaatggacatatgatatgtcactcaccaactgctgcaccatcttcctgtgcacaaagctatgacgatcactttctaccacctaagaaacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27782722 |
acaaagcattgaatggacatatgatatgtcactcaccaactgctgcatcatcttcctctgcacaaagctatgacgatcactttctaccacctaagaaacg |
27782623 |
T |
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| Q |
101 |
acaggtgctaagaagaagaagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcaaggcggtttcgagacaccacaa |
200 |
Q |
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| T |
27782622 |
gcaggttctaagaagaagaagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcacggcggtttcgagacaccacaa |
27782523 |
T |
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| Q |
201 |
gattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaacgacgaaggggaaacagaaatagggtcaagagttgtgaagaa |
295 |
Q |
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| T |
27782522 |
gattgtaaggaaccttctgcctctaatcaaagtattgatgagaagaagatga---atgaaggtgaaacagaactagggtcaaaagttgtgaagaa |
27782431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27780653 - 27780762
Alignment:
| Q |
1 |
acaaagcattgaatggacatatgatatgtcactcaccaactgctgcaccatcttcctgtgcacaaagctatgacgatcactttctaccacctaagaaacg |
100 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||| |||||||| |
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| T |
27780653 |
acaaagctttgaatggacatatgatatgtcactcgccaactgctgcaccatcttcctttgcacagagctatgatgatcagtttctaccacccaagaaacg |
27780752 |
T |
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| Q |
101 |
acaggtgcta |
110 |
Q |
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|||| |||| |
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| T |
27780753 |
gcaggcgcta |
27780762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 27780947 - 27781047
Alignment:
| Q |
192 |
acaccacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaacgacgaaggggaaacagaaatagggtcaagagttgtga |
291 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |||||| || ||||||||| |||||||| |
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| T |
27780947 |
acaccacaatattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatta---atgaaggtgaaacaaaattagggtcaaaagttgtga |
27781043 |
T |
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| Q |
292 |
agaa |
295 |
Q |
| |
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|||| |
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| T |
27781044 |
agaa |
27781047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38227604 - 38227572
Alignment:
| Q |
1 |
acaaagcattgaatggacatatgatatgtcact |
33 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
38227604 |
acaaagcattgaatggacatatgagatgtcact |
38227572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 441055 - 441005
Alignment:
| Q |
196 |
cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaaga |
246 |
Q |
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| T |
441055 |
cacaagattgcaaggaacctcctacctctaatcatggtattgaagagaaga |
441005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 44989837 - 44989777
Alignment:
| Q |
196 |
cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaacga |
256 |
Q |
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||||||||||||||||||||| | ||||||||| ||||||| |||||||||| ||||| |
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| T |
44989837 |
cacaagattgcaaggaacctgaaggctctaatcatgatattgaatagaagaagattaacga |
44989777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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