View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_25 (Length: 304)
Name: NF14944_low_25
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 34506609 - 34506752
Alignment:
| Q |
14 |
gataagtatagtttactcaattgaattttattcaatgtacagataaataa--------------gtgtgaatgaaacacattgatttcaattaatgtcca |
99 |
Q |
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| T |
34506609 |
gataagcatagtttactgaattgaattttattcaatgtacagataaataaaaagtaagttgtaagtgtgaatgaaacacattgatttcaattaatgtcca |
34506708 |
T |
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| Q |
100 |
tcttggacttttgatttctttttgactgaagaccatcttggatc |
143 |
Q |
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| T |
34506709 |
tcttggacttttgatttctttttgactgaagaccatcttggatc |
34506752 |
T |
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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 208 - 304
Target Start/End: Original strand, 34506817 - 34506918
Alignment:
| Q |
208 |
tgctcaagatattcaagatatatgtgtgt-----gtacatatatataattgagactattttataattcaattcaaattttataaaaggggatactgttta |
302 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |
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| T |
34506817 |
tgctcaagatattcaagatatatgtgtgtactaggtacatatatataattgagactattttataattcaattcaaattttataaaagaggatgctattta |
34506916 |
T |
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| Q |
303 |
tg |
304 |
Q |
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|| |
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| T |
34506917 |
tg |
34506918 |
T |
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