View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_27 (Length: 286)
Name: NF14944_low_27
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 2717506 - 2717766
Alignment:
| Q |
1 |
agttctcccatatcaaaccctgatcattgttaaatagcaaaatataaggctataatatacacttaaatgtacatatttaacagttacaaaattctgattt |
100 |
Q |
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| T |
2717506 |
agttctcccatatcaaaccctgatcattgttaaatagcaaaatataaggctataatatacacttaaatgtacatatttaacagttacacaattctgattt |
2717605 |
T |
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| Q |
101 |
agtaaggnnnnnnnctaagagaacaagagggatttaacattacatgcagtgcaagaaaagcgaccaagtatagctacagggcgggtaggagcagttggac |
200 |
Q |
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| T |
2717606 |
aataaggaaaaaaactaagagaacaagagggatttaacattacatgcagtgcaagaaaagcgaccaagtatagctacagggcgggtaggagcagttggac |
2717705 |
T |
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| Q |
201 |
aaatccattttatctgcatcatataacatcataagattattatcgaaatactatagagcta |
261 |
Q |
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| T |
2717706 |
aaatccattttatctgcatcatataacatcataaggttattatcgaaatactatagagcta |
2717766 |
T |
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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 17900456 - 17900541
Alignment:
| Q |
1 |
agttctcccatatcaaaccctgatcattgttaaatagcaaaatataaggctataatatacacttaaatgtacatatttaacagtta |
86 |
Q |
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| T |
17900456 |
agttctcccatatcaaaccctgatcattgttaaataacaaaatgtaaggttataatatatacttatctgtgcatacttaacagtta |
17900541 |
T |
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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 44432893 - 44432798
Alignment:
| Q |
139 |
attacatgcagtgcaagaaaagcgaccaagtatagctacagggcgggtaggagcagttggacaaatccattttatctgcatcatataacatcataa |
234 |
Q |
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| T |
44432893 |
attacatgcagtgcagggaaaaccaccaagtatcgccacgggacgggtaggagcagtagggcaaatccattttatctgtatcatatcatatcataa |
44432798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 49635529 - 49635605
Alignment:
| Q |
140 |
ttacatgcagtgcaagaaaagcgaccaagtatagctacagggcgggtaggagcagttggacaaatccattttatctg |
216 |
Q |
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| T |
49635529 |
ttacaagcagtgcaaggaaatccaccaaataaggctacaggccgcgtaggagcagttggacaaatccatttaatctg |
49635605 |
T |
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